Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 218 a.a., RNA polymerase sigma factor RpoE from Synechococcus elongatus PCC 7942

 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 22  LAYRLLGSTADAEDVLQDAWLKWSRGSDGVEEPAAF---LTTQVTRLALDRLRKDQRRAR 78
           L Y L     D  D++Q+ W++  R    ++EP +F   L+  VT L  D LR+ +RR  
Sbjct: 59  LIYHLAPDWEDRADLVQEVWIRVYRNLKNLQEPRSFKGWLSRIVTNLFYDELRRRKRRQP 118

Query: 79  LGAQWLPD-------PWVEPLEPGEAD-------LSTGLLLLLERLTPDQRAVYVLREAM 124
             +   P         W  P E    D           L   +  L    R   VLRE  
Sbjct: 119 ALSLDAPRLIGNDQLDWELPTEQAGPDEELEKQEFYNELRRAIAGLPESFRTTIVLREIE 178

Query: 125 DLDFADIAAILGKSVATCRQIMSRARAALKGE 156
            L + +IAA  G S+ T +  ++RAR  L+ +
Sbjct: 179 GLAYEEIAAATGVSLGTVKSRIARARQRLQDQ 210