Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 218 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 17  PRLRLLAYRLLGSTADAEDVLQDAWLKWSRGSDGVEEPAAFLTTQVTRLALDRLRKDQRR 76
           P+LR  A  L G    A+D++Q+  LK + G+  V EP          +  +     QRR
Sbjct: 28  PQLRAFARSLCGERELADDLVQETMLK-AWGARTVFEPGTNFRAWTFTILRNHYFTLQRR 86

Query: 77  ARLGAQWLPDPWVEPL------EPGEADLSTGLLLLLERLTPDQRAVYVLREAMDLDFAD 130
            R   QW  D   E L      + G  +L   +L  L++L PDQR   VL  A  + + +
Sbjct: 87  KRFVGQW-DDLVAERLLCAPAAQDGVVELRD-MLRALQQLPPDQREALVLVGAGGISYEE 144

Query: 131 IAAILGKSVATCRQIMSRARAALK 154
            A I G +  T +  +SRARA L+
Sbjct: 145 AAKITGVATGTVKSRVSRARATLE 168