Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 285 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

 Score =  140 bits (353), Expect = 3e-38
 Identities = 98/277 (35%), Positives = 146/277 (52%), Gaps = 10/277 (3%)

Query: 8   ALVHFLAQRPRLRLLAYRLLGSTADAEDVLQDAWLKWSRGSDG-VEEPAAFLTTQVTRLA 66
           A   F   RP+L  +AYR+LGS ADAED +Q+A+++W     G V EP AFL   VTRL 
Sbjct: 9   AAASFDPLRPKLIRVAYRMLGSVADAEDAVQEAFVRWMGTDRGAVREPEAFLRRTVTRLC 68

Query: 67  LDRLR--KDQRRARLGAQWLPDPWVEPLEPGEADLSTGLLLLLERLTPDQRAVYVLREAM 124
           LD+L+  + QR   +G  WLPDP VE  E  E D++  L+L LERL+P +RA ++L +  
Sbjct: 69  LDQLKSARHQRETYIGP-WLPDPVVE--EEPEEDVTLPLMLALERLSPLERAAFLLHDVF 125

Query: 125 DLDFADIAAILGKSVATCRQIMSRARAALK-GEARFDWDAAQTGTLVRRFAAACDQRDYG 183
            + F +IA  L +    CRQ+ +RAR  ++    RF  +  +   +   F  A    D  
Sbjct: 126 GVSFEEIATTLDRDAPACRQLAARARTHVREARPRFAVEQKRGLEIAEAFFNASRTGDMA 185

Query: 184 ALVALLGGESRLISDGGGKVKSARNPIRGPDRIARFILGVRRKF-QPADFAFRIAEINGL 242
           AL  +L  +  + SDGGGK  +A   + G   + +    +   F +      R   +NGL
Sbjct: 186 ALGTMLAADVSMHSDGGGKRAAAMQLVLGFKHVMKLHKSLAVLFGKYGSKLVRTGFVNGL 245

Query: 243 PALVG-ETKGDVRWALTFGCIGGRIGGIYLLADPDRL 278
           P  V  E+ G+++         GR+  IY+  +PD+L
Sbjct: 246 PGFVTLESDGEIQ-TTALEIEDGRVVAIYVTRNPDKL 281