Pairwise Alignments

Query, 345 a.a., histidine kinase from Magnetospirillum magneticum AMB-1

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 83/272 (30%), Positives = 129/272 (47%), Gaps = 31/272 (11%)

Query: 88  QESLVQAEKLASLGALVGGVAHEINTPVGIALSCASH----LADSTGAMRKLFEADDISV 143
           +E +VQ+EK+ S+G+L  G+AHEIN P+G  L  A +    L+      R+  E   + +
Sbjct: 401 EEMMVQSEKMLSVGSLAAGMAHEINNPLGAILHNAQNIRRRLSPELERNREAAEETGVRL 460

Query: 144 EDFERFMDTVKDTTGLILTNVERAAELIRSFKQVAVDRTSSERRRFDLATYIRETLFSLG 203
           E   +++   +     +L  +++A    R+ K V+   + S      LA      L    
Sbjct: 461 EAVNQYLQ--RREVPQLLDGIQQAGS--RAAKIVSHMLSFSRMSNRQLADCHLPVLIDQA 516

Query: 204 PHLRQAGHTVRLDCPEG-------IVMDSYP---------GALSQVLGNFVMNSL--VHG 245
             L  AG+   L   EG       IV D  P           L QVL N + N+   +H 
Sbjct: 517 --LEIAGNDFAL--MEGFDFKAIDIVRDFDPRVDRVPCIGNELEQVLLNLLKNAAQAIHA 572

Query: 246 YEPGELGTLSMTVEREGADQVRLTYADDGKGIPEDNLGRIFDPFFTTRRGSGGSGLGLHI 305
           ++ GE G + +   R       +   D+G GIPE+   RIF+PFFTT+    G+GLGL +
Sbjct: 573 HQVGEPGQIILRT-RLNPPWAEIQVEDNGGGIPENVRKRIFEPFFTTKEVGQGTGLGLSV 631

Query: 306 VYNLVTGPLGGSVAAESPPGGGTRFTVQLPLS 337
            Y ++T    G +  +  PG GT FT++LPL+
Sbjct: 632 SYFIITNNHQGQMEVQCQPGHGTTFTLRLPLN 663