Pairwise Alignments

Query, 564 a.a., N-acetylmuramoyl-L-alanine amidase from Magnetospirillum magneticum AMB-1

Subject, 415 a.a., N-acetylmuramoyl-L-alanine amidase from Sphingomonas koreensis DSMZ 15582

 Score =  204 bits (519), Expect = 5e-57
 Identities = 117/257 (45%), Positives = 158/257 (61%), Gaps = 8/257 (3%)

Query: 306 VPQPPAPVQQQAAPVPTPSMESVAKAKDGVPVIVIDPGHGGVDPGATGVSGTYEKHITLA 365
           VP PP P     A    P ++   +++   P++VID GHGG DPGA    G  EK +TL 
Sbjct: 167 VPVPPRP-----AAFKLPRIQGDDESR---PLVVIDAGHGGHDPGAISADGLQEKDLTLK 218

Query: 366 MARELKAMLERNGRYRVHLTRDRDVFIRLRERIAIARAQGADLFISLHADAVQSPQIRGL 425
            AR ++  L  +GR RV +TR+ D ++  R+R  IAR  GA LFIS+H DA  + +  G 
Sbjct: 219 TARAIRDELLSSGRVRVAMTREDDRYLLHRDRFEIARKLGAALFISVHCDAAHNAEASGA 278

Query: 426 SVYTLSRNASDAEAQALAEKENKADLIAGIDLTHESADVANILIDLAQRETMNRSAGFAT 485
           +VYTLS  ASD EA  LA +ENK+DL++GIDL  ++ +V++ILIDLAQRETMN SA FA 
Sbjct: 279 TVYTLSEVASDKEAARLAARENKSDLLSGIDLGGQNREVSSILIDLAQRETMNSSAKFAR 338

Query: 486 ELVDEVGQEMDLLGNTHRFAGFAVLKAPDVPAVLVEMGYLSNESEEKMLRQPQYRARLAK 545
            L  E    M +  N HR A   VLKAPDVP++L E GY+SN  +   L     R R+A+
Sbjct: 339 LLGREAQGLMPVKDNYHRMASLLVLKAPDVPSILFETGYISNAKDAAFLNSADGRRRVAE 398

Query: 546 SIAKAVERFFPPNLKAK 562
           S+++AV   F   + A+
Sbjct: 399 SVSRAVAIHFATRMAAR 415



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 22/160 (13%)

Query: 59  RFVLDLSDQVAFKIT-PLAEPYRIAIDLSGADYSGPGGISKPWGSVNSMHL----DGGRI 113
           R V+   ++VA   +  LA P RIA+DL+GA    PG  +   G V+++      DG R+
Sbjct: 47  RIVIQFDERVAAASSFVLAGPNRIALDLAGA---APGARADAGGPVSNVRQAQRGDGSRV 103

Query: 114 VLDLRKPALVKSAFIIAPRDGMGHRLVVDLAETTREAFLAAAGSGPASARAPVLKPPAAA 173
           V DL +PA+V      A     G  L ++L       F  AA  G  S   P     A++
Sbjct: 104 VFDLARPAIVTQGRFSAD----GTALTLELRTVDDSRFARAAAEGRMSFLPPFSFTRASS 159

Query: 174 KAVAPVPAAAKPSPAPVLVPPKPAEEFHLPEAAPAEAARP 213
           +    V          V VPP+PA  F LP     + +RP
Sbjct: 160 RHSYSV---------SVPVPPRPA-AFKLPRIQGDDESRP 189