Pairwise Alignments

Query, 601 a.a., hybrid sensor histidine kinase/response regulator from Magnetospirillum magneticum AMB-1

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  235 bits (600), Expect = 6e-66
 Identities = 193/577 (33%), Positives = 288/577 (49%), Gaps = 87/577 (15%)

Query: 52  WWAGAFVAVAALRLAMLRFY-----WTVADRDRRPDFWGPY----------MAFNLLLSG 96
           W  G      A +  ML  Y     W +  R    +F  P+          +   LLL  
Sbjct: 318 WTEGLQSTQPARQEQMLLVYYRPWNWVIGIRQDEQEFAEPFRRLEAIQQRSLYIQLLLGV 377

Query: 97  LMWLIFGLAAFDAHDAGHALFIAVILTGLTAASLASLSAYFPGQMAFALPTIAGFVIPVA 156
           ++ ++  +AA      G A  + + +  L  A+ A  S    GQ+   +PT         
Sbjct: 378 IIAVLGAIAA-----RGWAAHLGMRIEQLAHAADAMAS----GQLQQQIPT--------- 419

Query: 157 LSGERVMTILAVM---AAVFL--VVVTLSCRAAERVLVQSIRLRFENERLIGDLRRAGAE 211
            SG   +T+LA      AV L  ++V+L  R  ER       LR  N+RL     +A  +
Sbjct: 420 -SGRDELTVLAQAFNRMAVTLRELLVSLEHRVQERTAA----LRETNDRL----EQAREQ 470

Query: 212 AEAANRAKSDFLAVMSHELRTPIASILGFVQLA-GMAPTLARARAILP---KVGRAGRHL 267
           AEAAN+AKS FLA MSHELRTP+ +I+G+ ++    A        +LP   K+  AG+HL
Sbjct: 471 AEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKINNAGKHL 530

Query: 268 LAIVDDILDISRIEAGKYALDLAPFSLDEMLGHVEDLTRPLAEEKGVELSLQHSDDAPA- 326
           L +++ ILD+S+IEAG+  L L  FSL E++  V+ + +PL E+   +L +    D PA 
Sbjct: 531 LELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLV----DCPAD 586

Query: 327 --LLVGDALRLGQILINLVGNAVKFTSRGAVHVTVRTMPIDEISLLLECEVADSGIGIPA 384
             L+  D  +L Q L+NL+ NA KFT +G + + V     D++      +V DSGIG+  
Sbjct: 587 IGLMTADVTKLRQTLLNLLSNASKFTHQGTIQLQVAAQG-DQVVF----KVVDSGIGMSP 641

Query: 385 DRLEAIFEPFTQGDGSTTRRYGGTGLGLSVCRTLVEMMGGEITVESQPGRGSVFRFSALL 444
           ++++ IFE F Q D STTR++GGTGLGLS+ R  +EMMGG+ITVES  G GS F  +   
Sbjct: 642 EQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITL-- 699

Query: 445 GVAGAPQAQTEATESEPALSPDF--KALAGRR---------VLLAEDNPQLAEIYSEFLG 493
                   Q +  +S PA+ P    +A+A            VL+ +D P   E+    L 
Sbjct: 700 ------PRQVQPPQSIPAVDPVLTDEAIATATEQEDQNQPVVLVVDDEPSARELLRRMLE 753

Query: 494 MNGIQVIRVENGAQVVPCALDPARRPDLILMDMEMPQMSGLDATRAIRAHLSRDELPIIG 553
             G +V+    GA+ +  A +   RP LI +D+ MPQ+ G     A++A     E+P++ 
Sbjct: 754 KEGYRVVTAAGGAEGLQRAQE--LRPALITLDLMMPQVDGWSVLTALKADPMLAEIPVVM 811

Query: 554 LTAHAFASARDLCFAAGMNDQLVKPVDFHLLTRAIIR 590
           +   +    R L +A G  D L KP+D   L R + R
Sbjct: 812 V---SMVEGRSLSYALGAADYLHKPIDRDQLRRILER 845



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)

Query: 465 PDFKALAGRRVLLAEDNPQLAEIYSEFLGMNGIQVIRVENGAQVVPCALDPARRPDLILM 524
           PD + LA    L+ ED+P    +  + L  +G QV     G Q +       + PDLIL+
Sbjct: 849 PDRQPLA----LVIEDDPVNRSLLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLILL 904

Query: 525 DMEMPQMSGLDATRAIRAHLSRDELPIIGLTA 556
           D+ MPQM G     A+RA+ +   LP+I +TA
Sbjct: 905 DLMMPQMDGFAFVDALRANGNWQTLPVIVVTA 936