Pairwise Alignments

Query, 1022 a.a., error-prone DNA polymerase from Magnetospirillum magneticum AMB-1

Subject, 1173 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score =  399 bits (1024), Expect = e-115
 Identities = 318/1098 (28%), Positives = 508/1098 (46%), Gaps = 97/1098 (8%)

Query: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63
            +  L+  + Y+ ++G      L    +A G+ A+A+ D + +  +V+ +  A+ +GI+ +
Sbjct: 5    FVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSGIKPI 64

Query: 64   VGARLDLT----DG--ASLLCFPTDRAAYGRLSRLLTLGRRRAPKGECHLARADVAEHAE 117
             GA + +     DG  + L     +   Y  L+ L++ G     + +  +   D  + A 
Sbjct: 65   CGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWVKLAA 124

Query: 118  GQILVLIAPDPLEEGFA----------AQLAEWRTVVGDRLYLAATRRFRGDDGERLRVL 167
              ++ L      E G A          A+LAEWR V  DR YL   R  R +D E L   
Sbjct: 125  EGLIALSGAKEGEVGQALLNGDEALAEARLAEWRDVFADRFYLEIQRTSRVNDEEHLHAA 184

Query: 168  AGF----GIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALSAHGERHLKSPAE 223
            A      G PLVATNDV +         +   CI +G TL       +   +++LK+PAE
Sbjct: 185  AALADRTGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKTPAE 244

Query: 224  MARLFAACPEALANGLEVVRRCRFSLDELAYEYPN-EVAAGMDPQERLEILTRQGAARRY 282
            MA LF+  PEAL N +E+ +RC   +    Y  PN  V  GM   + L  ++ +G   R 
Sbjct: 245  MAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFEGLEERL 304

Query: 283  PRGVP---PKVQAQ-------LAHELALIRQLGFAPYFLTVHAIVAFAESRGI-LCQGRG 331
               +P   P  +A+       L  EL  I Q+GF  YFL V   + +A++ G+ +  GRG
Sbjct: 305  EVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRG 364

Query: 332  SAANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPDIDVDFEHERREEVIQHIYDTYG 391
            S A S V Y L++T +DP   DLLFERF++ ER   PD DVDF  + R+ VI ++ + YG
Sbjct: 365  SGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAYG 424

Query: 392  RHRAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAKANSGWGRRGIKDEHVRELGLDP 451
            R+      T      ++ +RDV +V G S    + L+K        G+  E   E+  +P
Sbjct: 425  RNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIP--FEVGMTLEKAYEME-EP 481

Query: 452  TEPGLA------RTLSLAEELTGFPRHLSQHVGGFVISKGRLDELVPIENAGMEDRTVIQ 505
                LA          +A +L G  R   +H GG VI+  +L +  PI         V Q
Sbjct: 482  LRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQ 541

Query: 506  WDKDDLDALGLMKVDVLALGMLSCIRKAFDLLRLHHGR----DLCLATLPREDASTYDML 561
            +DKDD+++ GL+K D L L  L+ I+ A + +     +     + +  +P +D  TY +L
Sbjct: 542  FDKDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKPTYQLL 601

Query: 562  CKADAVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGPIQGGMVHPYLRRRQGKET 621
             KA+   VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q GMV  ++ R+ G+  
Sbjct: 602  QKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAE 661

Query: 622  VDYPSEE-----LRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADGLRRAMATFRHTGQ 676
            V YP  +     L  VL  T G+ L+QEQ M+IA V AG+T   AD LRRAM   +   +
Sbjct: 662  VSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEE 720

Query: 677  VGAYGDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAHLVYVSAWLKCHYP 736
            +       I G    G +++ +  +F  +E F  YGF +SH+AA+  + Y +AWLK HYP
Sbjct: 721  MAKQRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYP 780

Query: 737  AAFACALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTL-EGKALRLGLRQVS 795
            + F  A+L++          ++ +     + I P DVN S++  T+ +   +  GL  V 
Sbjct: 781  SPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVK 840

Query: 796  GLARRDGERLAAARGAG--------YASAYGLWRTSGLERAALDRLAAADAFG------- 840
            G+     E +A  R  G        + +   L R +     AL R  A D  G       
Sbjct: 841  GVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALDRLGPYFFEEA 900

Query: 841  ----------------SMGLGRREAAWAIKALDAPPLPLFEEAPPPPEAKV-----ALPP 879
                            +M    + A    ++ ++  + LF      PEA V         
Sbjct: 901  KAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEADVYANHRNARE 960

Query: 880  ASVGEEVVGDYAALKLSLKCHPLAVLRDPFRVLGIMTNASLKDRKGGRVAVSGLV----L 935
             S+ E + G+   L L L  HP+       R         L+  +G +  ++GL+    +
Sbjct: 961  LSLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQ-TIAGLIVNLRV 1019

Query: 936  VRQRPGSANGVLFITLEDETGIANIVVWPDMFETFRRPILGGHLLRVDGRVQSED--GVI 993
            ++ + G   G  FITL+D +G     ++ + F + +  +    L+ V+G V ++D  G +
Sbjct: 1020 MKNKKGDKMG--FITLDDRSGRIEASLFAEAFNSAQALLQTDALVVVEGEVSNDDFSGGL 1077

Query: 994  HVVAEKIEDLSAHLGALA 1011
             + A+++  L      LA
Sbjct: 1078 RLRAKRVMSLEEARTGLA 1095