Pairwise Alignments

Query, 1022 a.a., error-prone DNA polymerase from Magnetospirillum magneticum AMB-1

Subject, 1030 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  894 bits (2310), Expect = 0.0
 Identities = 523/1044 (50%), Positives = 676/1044 (64%), Gaps = 42/1044 (4%)

Query: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63
            YAEL  +SNY+FL GASH  EL   A+ LG  AIAI D  +++G+V+AH+AA  AGI L+
Sbjct: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61

Query: 64   VGARLDLTDGASLLCFPTDRAAYGRLSRLLTLGRRRAPKGECHLARADVAEHAEGQILVL 123
            VG+   L  G  +L   T RA YG L RL++ GRRRAPKGE  +   D+       +L+ 
Sbjct: 62   VGSEFRLQQGTFVL-LATSRAGYGALCRLISRGRRRAPKGEYRINLDDLLSPLPDCVLLW 120

Query: 124  IAPDPLEEG----------FAAQ--LAEWRTVVGDRLYLAATRRFR--GDDGER--LRVL 167
              P P   G          FA Q  LA+  T    R YL A +     G   +R  +R+ 
Sbjct: 121  RPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQCLEAAGSLWQRYLMRLS 180

Query: 168  AGFGIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALSAHGERHLKSPAEMARL 227
                IP VA  DV  H+ AR+PL DVLTCIR G  L  A   L  + E +L+    + R 
Sbjct: 181  GLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHLCQNAEHYLRPLGSIHRR 240

Query: 228  FAACPEALANGLEVVRRCRFSLDELAYEYPNE-VAAGMDPQERLEILTRQGAARRYPRGV 286
            +    E +AN  ++  +CRFS+ EL YEYP E V AG    E L     +GA RRY   V
Sbjct: 241  YPQ--EWIANTQKIASQCRFSMAELRYEYPAELVPAGFSASEYLAREVAKGARRRYGLAV 298

Query: 287  PPKVQAQLAHELALIRQLGFAPYFLTVHAIVAFAESRGILCQGRGSAANSAVCYCLRVTP 346
            P  V+ Q   EL LI +L +  +FLT++ IV FA  + IL QGRGSAANS VC+CL +T 
Sbjct: 299  PAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFARRKRILHQGRGSAANSVVCFCLGITE 358

Query: 347  VDPAQMDLLFERFISAERGEPPDIDVDFEHERREEVIQHIYDTYGRHRAGLTATVIHYRT 406
            VDP ++++LFERFIS ER EPPDIDVDFEHERREEVIQ+IY  YGRHRA L A+VI YR 
Sbjct: 359  VDPTRVNMLFERFISKERHEPPDIDVDFEHERREEVIQYIYRKYGRHRAALAASVITYRL 418

Query: 407  RSAIRDVGKVMGLSEDTVEALAKANSGWGRRGIKDEHVRELGLDPTEPGLARTLSLAEEL 466
            +SA+ +VGKV+GL  + V  L +   G  RR     H     L    P       L + L
Sbjct: 419  KSAMGEVGKVLGLDRELVARLIQ---GIDRRD--PSHPWREQLAAQLPSADMFGYLVQSL 473

Query: 467  TGFPRHLSQHVGGFVISKGRLDELVPIENAGMEDRTVIQWDKDDLDALGLMKVDVLALGM 526
             GFPRHLSQHVGGFVIS G L ELVP+ENA MEDRTVIQWDKDDL+ALGL+KVDVLALGM
Sbjct: 474  LGFPRHLSQHVGGFVISAGPLAELVPVENAAMEDRTVIQWDKDDLEALGLLKVDVLALGM 533

Query: 527  LSCIRKAFDLLRLHHGRDLCLATLPREDASTYDMLCKADAVGVFQVESRAQMSMLPRLRP 586
            L+ IRK F+L+  H  +   + ++  ED + Y ML + D++GVFQVESRAQ SMLPRLRP
Sbjct: 534  LTAIRKCFELISRHQ-QPFGMRSIKAEDPNVYRMLSRGDSMGVFQVESRAQTSMLPRLRP 592

Query: 587  RRFYDLVVEVAIVRPGPIQGGMVHPYLRRRQGKETVDYPSEELRQVLGKTLGVPLFQEQA 646
              +YDLV+++AIVRPGPIQG MVHP+LRRR+G E V YPSE ++ VL +T+GVP+FQEQ 
Sbjct: 593  ACYYDLVIQIAIVRPGPIQGDMVHPFLRRRKGLEAVTYPSEAVKAVLERTMGVPIFQEQV 652

Query: 647  MKIAMVAAGFTASEADGLRRAMATFRHTGQVGAYGDKLIGGMVARGYERDFAERVFKQIE 706
            +K+AMVAAGF+  EAD LRRAMA+++HTG++ ++  KL+ GM ARGY  DFA ++F+QI+
Sbjct: 653  IKLAMVAAGFSGGEADALRRAMASWKHTGKLWSFEQKLLDGMAARGYSEDFARQIFRQIQ 712

Query: 707  GFGEYGFPESHAAAFAHLVYVSAWLKCHYPAAFACALLNSQPMGFYAPAQIVRDAADHGV 766
            GFGEYGFPESH+A+FA L YVSA+LK ++PAAF CALLNSQPMGFY+P+Q+++D   HGV
Sbjct: 713  GFGEYGFPESHSASFALLAYVSAYLKLYHPAAFCCALLNSQPMGFYSPSQLLQDVRRHGV 772

Query: 767  EIRPVDVNHSDWDCTL----EGKALRLGLRQVSGLARRDGERLAAAR-GAGYASAYGLWR 821
            E+  V +NHS WD +L     G A+RLG RQV GL  +  +RL   R  AG+A    +  
Sbjct: 773  EVFDVCINHSQWDSSLVKTATGFAIRLGFRQVKGLKEQAMQRLVDVRSAAGFAHLSEI-- 830

Query: 822  TSGLERAALDRLAAADAFGSMGLGRREAAWAIKALDAPPLPLFEEAPPPPE---AKVALP 878
            +  L+R AL+ LAAADAF  +   R ++ W + A  A  LPLF++ P P +    + +L 
Sbjct: 831  SMLLDRHALELLAAADAFRLLSGHRFQSRWQLSARQA-SLPLFDDLPEPLKPVGTEPSLD 889

Query: 879  PASVGEEVVGDYAALKLSLKCHPLAVLRDPFRVLGIMTNASLKD-RKGGRVAVSGLVLVR 937
              +  + +  DY +  LSL  HP+A+LR    +   +T  +L++ R G  V V+G+V  R
Sbjct: 890  APNAVQCLKADYRSKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVTGR 949

Query: 938  QRPGSANGVLFITLEDETGIANIVVWPDMFETFRRPILGGHLLRVDGRVQSEDGVIHVVA 997
            QRPG+A+GV FITLEDETG  N++VW       R+P L   +L+V G V+  DGV HVVA
Sbjct: 950  QRPGTASGVTFITLEDETGNTNLIVWMGTARAQRKPYLTSTILKVSGTVEHADGVTHVVA 1009

Query: 998  EKIEDLSAHLGALARGSHYPSRDF 1021
             ++ED+S  L +L       SRDF
Sbjct: 1010 GRLEDISHLLDSL----KVASRDF 1029