Pairwise Alignments

Query, 669 a.a., ferredoxin from Magnetospirillum magneticum AMB-1

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 46/160 (28%), Positives = 60/160 (37%), Gaps = 24/160 (15%)

Query: 510 GTIAVDQAKCTLCMACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTCPEKAVSLLP 569
           G I  D   CTLC  CV  CP        +      ++  CV C LC   CPE A+S+  
Sbjct: 286 GKILYDPKTCTLCNTCVKECPQGVRINKGE-----FVDGGCVLCELCIKECPEDAISIKE 340

Query: 570 RLAFGSEARLRQVLKEEEPYECIRCGK-----PFASKSVIERMTERMSNHAMFKGTGKLD 624
           R  F S      + KE    ECI CG      P  + +V+        N    K     D
Sbjct: 341 RSKFTS------IDKE----ECIACGTCSMVCPNDAITVVIDSLNFSGNKVHSKVIFN-D 389

Query: 625 LIKMCEDCRVVAQYQLEE---GARPLAGAEPPVTRTTEDY 661
              +CE C +     + E   G + +   E    RT  DY
Sbjct: 390 NCVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDY 429



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 509 FGTIAVDQAKCTLCMACVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTCPEKA 564
           +G   V++  CT C  C + CP   +    D          CV CGLC   CP  A
Sbjct: 65  YGGYYVNRKLCTGCGICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNA 120



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 519 CTLCMACVSACPAKAL---SGHP---DKPSLGILEVN--CVQCGLCRVTCPEKAV 565
           C +C  C   CP   +   SGH    D+ +  I   N  CV+CGLC + CP  A+
Sbjct: 391 CVICEKCAIHCPRDVIENTSGHKKVVDRENSYIRTDNDYCVKCGLCTIICPNDAI 445



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 21/102 (20%)

Query: 511 TIAVDQAKCTLCMACVSACP------AKALSG-----------HPDKPSLGILEVNCVQC 553
           +I++D  KC  C  C+  CP      A+ + G             D    G +  NC+ C
Sbjct: 173 SISIDSKKCVECGKCIYLCPKDTIIEAEMVDGCTRCNICNEVCPVDAIEYGQVTENCILC 232

Query: 554 GLCRVTCPEKAVSLLPRLAFGSEARLRQVLKEEEPYECIRCG 595
           G C   CP+  +     ++     + ++ +K +    CI CG
Sbjct: 233 GNCISKCPKDVL----EISEFKVVKTKEDVKAKPEKHCINCG 270



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 281 GQVACTRCLDACPSGALS--PQGDAAAVDAHVCGGHGPCASVCPTGAIRFDVP----AGN 334
           G V C  C+  CP  A+S   +    ++D   C   G C+ VCP  AI   +     +GN
Sbjct: 320 GCVLCELCIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAITVVIDSLNFSGN 379

Query: 335 GVYTRL 340
            V++++
Sbjct: 380 KVHSKV 385



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 275 CAHSRNGQVACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASVCPTGAIRFDVPAGN 334
           C   +N +++  +C++ CP+ A+    D  A     CG    CA  CPTGAI+ +   G 
Sbjct: 15  CEDCKNKEIS--KCMEVCPTNAIK-MIDGKAFSCITCG---TCAKECPTGAIKKNEYGGY 68

Query: 335 GVYTRL 340
            V  +L
Sbjct: 69  YVNRKL 74



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 519 CTLCMACVSACPAKALSGHPDKPSLGILEV------NCVQCGLCRVTCPEKAV 565
           C LC  C+S CP   L     K      +V      +C+ CGLC   CP  A+
Sbjct: 229 CILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 25/64 (39%)

Query: 261 EFEKPRWIKVEAALCAHSRNGQVACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASV 320
           E  + + +K +  + A      + C  C+D CPS AL  +      D   C     C   
Sbjct: 245 EISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKE 304

Query: 321 CPTG 324
           CP G
Sbjct: 305 CPQG 308



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 283 VACTRCLDACPSGALSP-QGDAAAVDAHVCGGHGPCASVCPTGAI 326
           + C  C   CP+GA+   +     V+  +C G G C +VCP   I
Sbjct: 46  ITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDII 90



 Score = 31.6 bits (70), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 283 VACTRCLDACPSGALSPQGDAAAVDAHVCGGHGPCASVCPTGAIR 327
           V C  C   CP+ A+    D   ++   C     C ++CPT AIR
Sbjct: 431 VKCGLCTIICPNDAI----DKGEINTEKCEYCSACVNICPTRAIR 471



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 283 VACTRCLDACPSGALS--------PQGDAAAVDAHVCGGHGPCASVCPTGAIRFD 329
           + C  C+  CP   L          + D  A     C   G C   CP+ A+RF+
Sbjct: 230 ILCGNCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALRFE 284



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 514 VDQAKCTLCMACVSACPAKAL 534
           ++  KC  C ACV+ CP +A+
Sbjct: 450 INTEKCEYCSACVNICPTRAI 470



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 525 CVSACPAKALSGHPDKPSLGILEVNCVQCGLCRVTCPEKAV 565
           C+  CP  A+     K        +C+ CG C   CP  A+
Sbjct: 26  CMEVCPTNAIKMIDGKA------FSCITCGTCAKECPTGAI 60