Pairwise Alignments

Query, 468 a.a., HlyD family type I secretion periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  200 bits (508), Expect = 9e-56
 Identities = 123/432 (28%), Positives = 212/432 (49%), Gaps = 20/432 (4%)

Query: 57  RFTMLLASTTTAAFVVWASFTDVPEIATAEGQIIPTGQVQAVQHLEGGIVQDILARDGDL 116
           R  +   +   A F++WA F  + ++ T  G++IP+ QVQ +Q L+GGI+Q++  R+GD+
Sbjct: 29  RLIIWALAAMVACFLLWAGFAKLDKVTTGSGKVIPSSQVQVIQSLDGGIMQELFVREGDI 88

Query: 117 VEAGAPIVRLNAAQAISDLEQTRAREATLLIKAERLRA-----LAEERQPDFSNMPK--- 168
           V  G P+VR++  +  SD  Q       L   A R+RA     L  +   D+    K   
Sbjct: 89  VTKGQPLVRIDDTRFRSDFAQQEQEVLGLKTNAIRMRAELDSILISDMTSDWREQVKITK 148

Query: 169 -----------GYDRLMSDNMAIFNSQSQARDTSRSVILSQMEQKRSDLRLLESQERSLR 217
                          L+      +N +         +++ Q++Q++ ++  L S+  +L 
Sbjct: 149 KALVFPDSITEAEPALVRRQQEEYNGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLT 208

Query: 218 EQLGPLQEEMTMRQELVAKGLVSRVVFLDTKRELSRVQGELARLIGQEVTAREALSEVEN 277
             +  +  E+ + + L  KG+V  V  L  +R ++  QGEL  L       + AL E   
Sbjct: 209 TSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAIL 268

Query: 278 RLMDNKSSLQKSTMDDLGTTINELAQVQESIGRLEDRVARLEIIAPVRGLVKGLTVKNQG 337
           +  +            L  T   L+++ E+    +D+V++  I +PV G +K + +   G
Sbjct: 269 KRREAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSKAVITSPVNGTIKTVHINTLG 328

Query: 338 AVIQAGGNVCEVVPVETQMKVDAKINTKDVGHLKIGQPVRVKVTTYDFARYGAVDGTLTK 397
            V+Q G ++ E+VP E Q+ ++ KI  KD+  L  G P  VKVT YDF RYG + GT+  
Sbjct: 329 GVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEH 388

Query: 398 ISASSFADEKGNPFFKGVIDLKHNYVGLTPG-RYGIQPGMSVTAEIITGDKTLLQYMLKP 456
           ISA +  D++GN F+   +  + + +    G +  I PGM  T ++ITG +++L+Y+L P
Sbjct: 389 ISADTSQDDEGNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILNP 448

Query: 457 IFTQIQQSFHER 468
           I      +  ER
Sbjct: 449 ILRAKDTALRER 460