Pairwise Alignments

Query, 460 a.a., DNA repair protein RadA from Magnetospirillum magneticum AMB-1

Subject, 454 a.a., DNA repair protein RadA (RefSeq) from Shewanella amazonensis SB2B

 Score =  377 bits (967), Expect = e-109
 Identities = 204/444 (45%), Positives = 286/444 (64%), Gaps = 17/444 (3%)

Query: 1   MAKSPSSQFVCQECGAVTRKWAGKCEACGAWNSITE---------EAAREEVPKGLTAGK 51
           MAK+ ++ +VC ECG    +W G+C AC  WNSITE          + R     G    +
Sbjct: 1   MAKNKTA-YVCNECGQDFPRWQGQCSACLEWNSITEVRLGAATVARSGRFSGYAGAGVSE 59

Query: 52  GKRIEFVGLEGSAAPLARWLTGIGELDRVCGGGLVPGSCLLVGGDPGIGKSTLLLQATAR 111
            K ++ + L      L R  +   E DRV GGG+VPGS +L+GG PG GKSTLLLQ   +
Sbjct: 60  VKTLDQIDLN----ELPRIPSSFTEFDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCQ 115

Query: 112 LSSQISVAYISGEEAVDQVRMRAARLGYAKATVALASAGSLRDIIASLDQPDAPQVVVID 171
           L+  +   Y++GEE++ QV MRA RLG   + + + S  S+ + +  +   + P+++V+D
Sbjct: 116 LAEVMPALYVTGEESLQQVAMRAHRLGLPTSKLKMLSETSV-ETLCDIALKEQPKLIVVD 174

Query: 172 SIQTVYADNIESAPGTVSQVRACAAELIRLAKRRGFVLFLVGHVTKEGTIAGPRVLEHMV 231
           SIQ ++  +++S+PG+V+QVR  A+ L R AK+ G  + +VGHVTK+G++AGP+VLEH +
Sbjct: 175 SIQVMHMSDVQSSPGSVAQVRESASFLTRFAKQNGIAVIMVGHVTKDGSLAGPKVLEHCI 234

Query: 232 DTVLYFEGDRGHQFRILRAVKNRFGATDEIGVFEMTEGGLSEVANPSALFLAERRGNVSG 291
           D  + FEGD   ++R LR+ KNRFGA +E+GVF MTE GL EVANPSA+FL+      SG
Sbjct: 235 DCSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEASSG 294

Query: 292 SCVFAGMEGTRPMLVEIQALVAPSSLSSPRRAVVGWDTNRLSMVLAVLDARCGLALSGND 351
           S V    EGTRP+LVE+Q LV  S+LS+PRR  VG D NRL+M+LAV+    GL +S  D
Sbjct: 295 SLVMVVWEGTRPLLVELQVLVDNSALSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQD 354

Query: 352 VYLNVAGGLRIAEPAADLAVAAALVSSASDVPVPADMVVFGEIGLSGEVRAVAQADTRLK 411
           V++NV GG+++ E +ADL +  A+VSS     +P D+V FGE+GLSGE+R V     RL 
Sbjct: 355 VFVNVVGGVKVTETSADLTLLLAMVSSFRGEVLPRDLVAFGEVGLSGEIRPVPNGQERLV 414

Query: 412 EAAKLGFAQALVPA--RPRKDKGG 433
           EAAK GF +A+VP    P+K   G
Sbjct: 415 EAAKHGFKRAIVPRANMPKKPPEG 438