Pairwise Alignments

Query, 481 a.a., uptake hydrogenase from Magnetospirillum magneticum AMB-1

Subject, 510 a.a., periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  219 bits (559), Expect = 1e-61
 Identities = 162/506 (32%), Positives = 231/506 (45%), Gaps = 57/506 (11%)

Query: 6   TRLIVGPFNRVEGDLEVTLDVQDGRVAEARVNAPLYRGFEQILLGRPPSDALVIAPRICG 65
           T + + P  R+EG L+  + V++G+V +AR++  +YRGFE IL GR P DA  I  RICG
Sbjct: 17  TTIAIDPVTRIEGHLKAEVVVENGKVVDARLSGGMYRGFETILRGRDPRDASQIVQRICG 76

Query: 66  ICSVSQSVASARALAGLGPAAMPENGTLATNLILACENAADHLTHFMLFFAPDLARSCYG 125
           +C  + S AS  AL     A +P NG +  NLI        H+ HF    A D  +    
Sbjct: 77  VCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQG--- 133

Query: 126 GRPWFAAARRRFAAGDGECARALLPARA----------RFLH-LMGLLAGKWPHSLALQP 174
             P  A    RF   D   ++ L  A            R  H ++ L  G+ PH      
Sbjct: 134 --PDTAPFVPRFPKSDLRLSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVV 191

Query: 175 GGVTKAVDPGEKIRLLSILAEFREALETHLFADSLEAIAALDGLPALDAWADAAPPEAGD 234
           GG T+      K +L+   A F++        D +E             +          
Sbjct: 192 GGATEIPT---KEKLVEYAARFKKV------RDFVE-----------QKYVPVVYTIGSK 231

Query: 235 FRLFLHIARDLDFTGLGAGPGRFISSGSFGLFAPGVWAQGASTPFDPAQVSEDHAHSWM- 293
           ++    + +      L  G     +SG   LF PGV+A+G   PFDP+++ E   +SW  
Sbjct: 232 YKDMFKVGQGFK-AALCVGAFPLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFA 290

Query: 294 -EGAILAPAVGKTIPAPDKPEGYSWCKAPRLDGQVAEVGALARQVVDGHPLARA------ 346
            E   L    GKTIPAPDK   YS+ KAPR DG   EVG LAR  V+   L+        
Sbjct: 291 EETTGLNYKEGKTIPAPDKAGAYSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLK 350

Query: 347 ----LNAAR-------PGGSVHDRVVARLLELARLIPAMESWIRAIRPAEPFCAPPSPLG 395
               ++A +          S+  R VAR  E   ++ A+E W++ I+  E     P+   
Sbjct: 351 DLFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVMPAVPA 410

Query: 396 EGAAVGLVEAARGTLGHWLGLHNGRIAQYQIVAPTTWNFSPRDAQGNPGALEIALAGAPV 455
                G  EA RG+L H++ + + +I  YQIV+ + WN +PRD  G  GA+E AL G PV
Sbjct: 411 SAEGTGFTEAPRGSLLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPV 470

Query: 456 LPGETTPVAVQHVVRSFDPCMVCTVH 481
                 PV V  ++R+FDP + C VH
Sbjct: 471 -DDIQNPVNVARLIRAFDPULGCAVH 495