Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

Subject, 196 a.a., RNA polymerase sigma factor from Synechococcus elongatus PCC 7942

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 12  LAATLDRDRGKLLGFVRGRMGGGLQDQDPEDILSDVVLGLLERADLLAEVE--NLTAYLL 69
           LA   DR  G + G     +G     Q+ ED+  D+ + L++R     + +  +L  YL 
Sbjct: 31  LARLYDRHAGLVYGIAMQVLGN---PQEAEDLTQDIFIRLVDRQHSHYDSKRGSLRTYLA 87

Query: 70  TAMVNRVRDLFRRRR----------DLPMPEAMPAEPSQPAGVEER-LELTRALSLLSTA 118
               +R  D  R RR          +    EA    P    G  E   E+ +AL+ L  +
Sbjct: 88  VLTRSRAIDRLRSRRTQASAIERVQNQVKQEATEDPPIASLGAAETSAEVQKALAQLPES 147

Query: 119 EQAVWLAVEMEGFAFVELAEAWGEPLGTLLSRKSRATRRLRKALEE 164
           +Q V      EG +  ++AE   EPLGT+ +R  R   +LR+ L++
Sbjct: 148 QQQVLRLAYYEGLSQSDIAERLSEPLGTIKARARRGLLKLRQMLQD 193