Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

Subject, 216 a.a., 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' from Phaeobacter inhibens DSM 17395

 Score = 46.2 bits (108), Expect = 4e-10
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 21  GKLLGFVRGRMGG-----GLQDQDPEDILSDVVLGLLERADLL-AEVENLTAYLLTAMVN 74
           G+L  +   R+ G     G+     E+++ DV+L +  ++ +   E   ++A++     N
Sbjct: 57  GRLFDYFAPRLKGMICRSGMPPSQAEEVVQDVMLTVWRKSAMFDPERAQVSAWIYQIARN 116

Query: 75  RVRDLFRRRR-----DLPMPEAMPAEPSQPAGVE-ERLELTRALSLLSTAEQAVWLAVEM 128
           R  D+ R+ R     +L +PE    + +Q   ++ E  +L  AL+ L  A++ +     +
Sbjct: 117 RQIDVIRKERRPIPEELKLPEDTQEDAAQILALDQETSKLRAALARLKPAQREMVEKAYL 176

Query: 129 EGFAFVELAEAWGEPLGTLLSRKSRATRRLRKALEE 164
                 ++ E  G PLGT+ SR      RLR  L+E
Sbjct: 177 GELTHADIREQTGLPLGTIKSRIRLGLERLRHELKE 212