Pairwise Alignments

Query, 576 a.a., chemotaxis protein from Magnetospirillum magneticum AMB-1

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 2e-24
 Identities = 75/273 (27%), Positives = 130/273 (47%), Gaps = 22/273 (8%)

Query: 138 KQMIEIAEDIDEVATKVADQ-HALLAELQQGIRALSDANQRIVAAMEETLAGATAASAEA 196
           K++   ++   +VA ++A Q H  +      I ++  A   + A   E    +   ++E 
Sbjct: 431 KELASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNEMSATALEVAKASEQTASET 490

Query: 197 ETSRQRVRGSLGDIDEVVRMVTDGRGLLLDLQDAMG-------NVVGVAQGIGHIARQTN 249
           E     V+     + + +  VT      L  ++A+G       N+  + + I  IA QTN
Sbjct: 491 EAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAESSTNISKILEVISAIAEQTN 550

Query: 250 LLALNATIEAARAGEHGKGFAVVAGEVKELSRRAGSASAEIRQTLEGL---TGTAGKLVE 306
           LLALNA IEAARAGE G+GFAVVA EV+ L+ +  S++ EI + +E L     +A ++++
Sbjct: 551 LLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLIEALQREVNSASQIID 610

Query: 307 QGDHSATKAGGLTAETAA-----------IADTMDHIRTSLAEMAGRVENVAADASSIHD 355
           QG   A +A   T    +           ++  + HI T+  E +   E V+ + + I D
Sbjct: 611 QGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISD 670

Query: 356 RSSGLSAEIDQAAEALAEFRTRLDATRSRLQDL 388
            +S L+   D+A ++ A     ++    +L  L
Sbjct: 671 SASELARLADEAQQSSASLAGLVEQQHQQLGKL 703



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 32/68 (47%)

Query: 136 IGKQMIEIAEDIDEVATKVADQHALLAELQQGIRALSDANQRIVAAMEETLAGATAASAE 195
           I  Q+ E++  +  +AT   +Q A+  E+ + I  +SD+   +    +E    + + +  
Sbjct: 633 IVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGL 692

Query: 196 AETSRQRV 203
            E   Q++
Sbjct: 693 VEQQHQQL 700



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 121 EETTIVAAFAR-ETGGIGKQMIEIAEDIDEVATKVADQHALLAELQQGIRALSDANQRIV 179
           E+T ++A  A  E    G+Q    A   DEV    +   +   E+ + I AL        
Sbjct: 547 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDEIGKLIEALQREVNSAS 606

Query: 180 AAMEETLAGATAASAEAETSRQRVRGSLGDIDEVVRMVTD----GRGLLLDLQDAMGNVV 235
             +++ + GA  A A+ E++   +   +  I EV   VT             ++   N+ 
Sbjct: 607 QIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIATAAEEQSAVTEEVSRNIT 666

Query: 236 GVAQGIGHIAR 246
           G++     +AR
Sbjct: 667 GISDSASELAR 677



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 26/221 (11%)

Query: 189 ATAASAEAETSRQRVRGSLGDIDEVVRMVTDGRGLLLDLQDAMGNVVGVAQGIGHIARQT 248
           A +A A +  S   + G +  +  VV +    R ++  L+     V  +A   G + +Q 
Sbjct: 342 AMSAMASSLGSLLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQV 401

Query: 249 NLLALNATIEAARAGEHG--KGFAVVAGEVKELSRRAGSAS---AEIRQ----------- 292
            + + +A + A   G +G      ++ GE+KEL+ R+ + S   AEI Q           
Sbjct: 402 TVES-HAELIALGGGINGFINKLRLLIGELKELASRSQAESQVAAEIAQQTHNSVNRQYS 460

Query: 293 -------TLEGLTGTAGKLVEQGDHSATKAGGLTAETAAIADTMDHIRTSLAEMAGRVEN 345
                   +  ++ TA ++ +  + +A++   +T    A  D++      +  M+     
Sbjct: 461 DIESVVTAVNEMSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLL 520

Query: 346 VAADASSIHDRSSGLSAEIDQAAEALAEFRTRLDATRSRLQ 386
                  + + S+ +S +I +   A+AE +T L A  + ++
Sbjct: 521 AKEAVGKVAESSTNIS-KILEVISAIAE-QTNLLALNAAIE 559



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 528 LKAARNTNPFAVQSYRRDMGGGKQALMLDVSAPILVNGRHWGALRI 573
           L A     P  ++ Y  ++  G  ALM  ++ P++V G   G + +
Sbjct: 186 LCAKDTKQPCLMEPYLYEISPGNTALMTSLTVPVVVGGSFRGVIGV 231