Pairwise Alignments

Query, 345 a.a., TRAP-type C4-dicarboxylate transport system from Magnetospirillum magneticum AMB-1

Subject, 322 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Pseudomonas fluorescens FW300-N2E2

 Score =  113 bits (282), Expect = 8e-30
 Identities = 83/274 (30%), Positives = 130/274 (47%), Gaps = 9/274 (3%)

Query: 5   LLAAFLLLVLLGGPQALAQTSVHLAHSQPQDAAVDPAAAAASQFRRSLDELSGGSLKAAL 64
           LL A L L  L   QA     + +A   P+     P   A     ++L++ S G LK   
Sbjct: 7   LLIAALPLAFLA--QAAHALDIKIADIHPKGY---PTVVAEESMGKTLEKESNGELKFKY 61

Query: 65  FPDGQLGGNRDMAGLVAKGVLHSALVTAGGLAPLYPPMAVTNMPFALDRPQAAYALYDGE 124
           FP G LG  +++   +  G +  + V+ G + P+ P + V NMPF         A+ DG+
Sbjct: 62  FPGGVLGSEKEVIEQMQTGAVQMSRVSLGIVGPVVPDVNVFNMPFIFRDQAHMRAVIDGD 121

Query: 125 FGQRLAADIERRT-GLVVLGFADAGGMHVLTNSRRPIAGPADMAGLKIRTIPGYETLDTM 183
            G  +   I     GLV L + D G  ++ T  ++P+    D+ G+KIR + G       
Sbjct: 122 VGDAILDRITNSEFGLVALAWMDGGTRNLYT--KKPVHKLEDLKGMKIR-VQGNPMFIET 178

Query: 184 IRALGAVPVKVSSRDEFQALEMGVIDGQMNPPSVVLGRRYHHVQTHATLTNHLYSPYVWI 243
             A+GA  + + + + F AL+ GVIDG  N P  +L   ++    + +LT HL  P   +
Sbjct: 179 FNAMGANGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHYQNAKYYSLTGHLILPEPIV 238

Query: 244 YNRAAFETLTPEGQQAVREAARRAIAAGRELSGK 277
            ++  +  LTPE Q  V++AA+ A A  R L  K
Sbjct: 239 MSKITWNKLTPEQQDMVKKAAKAAQAEERVLWDK 272