Pairwise Alignments

Query, 764 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Magnetospirillum magneticum AMB-1

Subject, 854 a.a., ATP-dependent chaperone ClpB from Pseudomonas stutzeri RCH2

 Score =  318 bits (814), Expect = 1e-90
 Identities = 201/469 (42%), Positives = 283/469 (60%), Gaps = 30/469 (6%)

Query: 2   LSRNLEQSLHRALSHATERRHEYATLEHLLLALTDDQDAVA--VLRACNVDVDKLKRDLG 59
           L+  L+ +L  A S A    H      HL+ AL + Q      +L     D+  L++ L 
Sbjct: 6   LTSKLQLALSDAQSIAVGLDHPAIEPLHLMQALLEQQGGSIKPLLMQVGFDIAALRQALT 65

Query: 60  EFIDTNLSELVSPRGTDPKPTAGFQRVVQRAAIHVQSSGREEVTGANVIVALFSERESHA 119
           + +D  L +L +P G D   +    R++ +A    Q  G + ++   V++A         
Sbjct: 66  KELD-QLPKLQNPTG-DMNLSQDLARLLNQADRLAQQKGDQYISSELVLLAALDSN---- 119

Query: 120 VYFLQSQDMTRLDAVNYISHGVAKAPGRGQNRTVHGADDEANPDKVVKKGQEALNAYCIN 179
                    TRL  +  ++ GV+K         + G D   +P+   ++ ++AL+ Y ++
Sbjct: 120 ---------TRLGKL-LLAQGVSKKALENAINNLRGGDAVNDPN--AEESRQALDKYTVD 167

Query: 180 LNKKAAQGKIDPLIGRDEEIDRTIQILCRRSKNNPLYVGDPGVGKTAIAEGLARRIVNGE 239
           + K+A  GK+DP+IGRD+EI RTIQ+L RR+KNNP+ +G+PGVGKTAI EGLA+RIVNGE
Sbjct: 168 MTKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227

Query: 240 VPDVLKNATIFALDMGSLLAGTRYRGDFEERLKAVVTELENYDGAV-MFIDEIHTVIGAG 298
           VPD LK+  + ALDMGSL+AG ++RG+FEERLKAV+ +L   +G V +FIDE+HT++GAG
Sbjct: 228 VPDGLKDKRLLALDMGSLIAGAKFRGEFEERLKAVLNDLSKQEGRVILFIDELHTMVGAG 287

Query: 299 ATSGGSMDASNLLKPALASGSLRCIGSTTYKEFRNHFEKDRALVRRFQKIDVNEPSIPDT 358
              G +MDA N+LKPALA G L C+G+TT  E+R + EKD AL RRFQK+ V+EPS  DT
Sbjct: 288 KAEG-AMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDT 346

Query: 359 IKILNGIKTYYESHHKVRYTAEAIKAAVELSAKYITDRKLPDKAIDVIDEVGASRMLLPE 418
           I IL G+K  YE HH V  T  AI AA +LS +YITDR+LPDKAID+IDE  ASR+ +  
Sbjct: 347 IAILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDE-AASRIRMEI 405

Query: 419 SKRRKTVTVRDVEEIVAKIARIPPKSVSTNDVEA----LRNLERDLKTL 463
             + + +   D   I  KI R   +++   D EA    L  LE D+  L
Sbjct: 406 DSKPEELDRLDRRLIQLKIER---EALKKEDDEATKKRLAKLEDDIAKL 451



 Score =  278 bits (712), Expect = 7e-79
 Identities = 156/426 (36%), Positives = 256/426 (60%), Gaps = 16/426 (3%)

Query: 336 EKDRALVRRFQKIDVNEPSIP----DTIKILNGIKTYYESHHKVRYTAEAIKAAVELSAK 391
           E D A  +R  K++ +   +     D  +I    K   +   +++   E  KA +E + +
Sbjct: 432 EDDEATKKRLAKLEDDIAKLAREYADLEEIWKSEKAEVQGSAQIQQKIEQAKAELEAARR 491

Query: 392 YITDRKLPDKAIDVIDEVGASRMLLPESKR------RKTVTVRDVEEIVAKIARIPPKSV 445
                ++ +    +I ++  S  ++ +  +      R  VT  ++ E+V+K   IP   +
Sbjct: 492 KGDLARMAELQYGIIPDLERSLEMVDQHGKKENQLLRNKVTDEEIAEVVSKWTGIPVSKM 551

Query: 446 STNDVEALRNLERDLKTLVFGQDKAIEALASAIKLARAGLREPEKPIGCYLFSGPTGVGK 505
              + + L  +E  L T V GQ +A+ A+++A++ +RAGL +P +P G +LF GPTGVGK
Sbjct: 552 LEGERDKLLRMEDMLHTRVIGQHEAVVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVGK 611

Query: 506 TEVARQLAKIM---GIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQHPH 562
           TE+ + LA+ +      + R DMSE+ME+HSV+RLIGAPPGYVG+++GG LT+A+ + P+
Sbjct: 612 TELCKALAEFLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPY 671

Query: 563 SVLLLDEIEKAHPDLFNILLQVMDHGRLTDHNGKTVDFRNVILIMTTNAGAADLAKSAIG 622
           SV+L+DE+EKAHPD+FN+LLQV++ GRLTD +G+TVDF+N +++MT+N G+  + +    
Sbjct: 672 SVVLMDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFKNTVIVMTSNLGSTQIQELVGD 731

Query: 623 FGRETREGDDTDAINRMFSPEFRNRLDSTIAFANLTPEIVAQVVDKFVMQLETQLGDRDV 682
            G   +     DA+   F PEF NR+D  + F  L  E +A + D  + +L  +L +R++
Sbjct: 732 PG--AQRAAVMDAVAHHFRPEFINRIDEVVVFDPLGREQIAGIADIQLGRLRKRLAEREL 789

Query: 683 TIELTDEARAWLAKKGYDRSFGARPLARVIQEHIKKALAEELLFGRLSKGGIVRVRVGED 742
           ++EL+ EA   L   GYD  +GARPL R IQ  I+  LA+++L G+ + G  V+ RV E 
Sbjct: 790 SLELSQEAMDKLIAVGYDPVYGARPLKRAIQRWIENPLAQQILSGQFAPGSSVKARV-EG 848

Query: 743 GKLAFE 748
            ++ F+
Sbjct: 849 EQIVFD 854