Pairwise Alignments

Query, 334 a.a., membrane-fusion protein from Magnetospirillum magneticum AMB-1

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 54.7 bits (130), Expect = 4e-12
 Identities = 68/274 (24%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 8   FFIKAVGILLFAVEIGWFVFLPFWNEAKEWWKRRETIGRSRRSLLPVGFFVATLVLAL-V 66
           FF+  + ILLF   IG+ +F     +  E+   R           P   F  T+V A  V
Sbjct: 6   FFMLLIAILLFGSVIGFNLFKQ--QKIAEYLANR-----------PEPEFPVTVVTANPV 52

Query: 67  PWRAHVSAPAVMKAERHLELYAASPARIERILMVEGRQVAEGESLALLSSPDLEYRLAQV 126
            W   + A   ++  + + L   +   I++I    G QVA+ + L LL S      L   
Sbjct: 53  DWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKST 112

Query: 127 ERRILVLEYELASFSFDASFRERSQALREELETAI----AERVSLQRELARLSVTAPMAG 182
           E R+   + +   +    +    S+   +E E +     A+  SL+  +AR  + AP AG
Sbjct: 113 EARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAG 172

Query: 183 RVVDMIPDLQIGQWISPRERLAQLAGTGALAVEAFVAESDVGRLRIGNEGRFVADDPGRP 242
             V  I ++ +GQ++ P   + +L  T  + +   V + D+ R+ +  E     D   + 
Sbjct: 173 --VIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQT 230

Query: 243 DLPCRIATIDSGAIRSLTEPVLASVAGGPIQVRA 276
                I+ I         EP + SV  G IQV+A
Sbjct: 231 SFKGSISAI---------EPAV-SVQSGLIQVQA 254