Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter permease from Magnetospirillum magneticum AMB-1

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score =  415 bits (1067), Expect = e-120
 Identities = 231/456 (50%), Positives = 303/456 (66%), Gaps = 35/456 (7%)

Query: 1   MNSAVIFGLLIVLMLTGMPISISLGLTVLSFLFLFTQVPIESVALKLFTGI-EKFEIMAI 59
           M  A +F  L + ML GMPI+I+LG + +  + LF+   + SVALKL+    E + ++AI
Sbjct: 1   MTIATLFISLFLCMLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAI 60

Query: 60  PFFILAGNFLTHGGVARRMINFATAMVGHWYGGLGLAGVMACALFAAVSGSSPATVVAIG 119
           PFFIL+  FL+ GGVARR+I+FA   VGH  GGL +A VMAC LFAAVSGSSPATV AIG
Sbjct: 61  PFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIG 120

Query: 120 SIILPAMVKQGFPNKFGAGVITTSGALGILIPPSLVMVMYAVATNTSVGALFMAGVIPGL 179
           SI++  MV+ G+P KF AGVITTSG LGILIPPS+VM++YA AT  S   +FMAG+IPGL
Sbjct: 121 SIVIVGMVRAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 180 VLATVLGAVTWYIAWKNDYPRLPPATWAQRFRAFREAIWGLALIVIVIGGIYTGVFTPTE 239
           ++  +L    + +A     P  P   +     +  +A+ GLALIVIV+G IY G+ +PTE
Sbjct: 181 MMGLLLMLAIYIVARIKKLPSRPFPGFRPLAISSAKAMGGLALIVIVLGSIYGGIASPTE 240

Query: 240 AAAMSAVYAFLIAVFVYKDM-PLKGVG--------------------------------- 265
           AAA++ VYA+ IAVF Y+D+ PLK V                                  
Sbjct: 241 AAAVACVYAYFIAVFGYRDIGPLKNVSWRDSGEPLIRAILRNLGFMVLAVFKTPADKEIR 300

Query: 266 KILLSSASMSAMLLYIITNAVLFSFVLANENIPHAIADWIVGKELGVIAFLLVVNVLLLV 325
            ++   A +S MLL+II NA+LF+ VL  E IPH IA+ IVG  L V  FL++VN+LLL 
Sbjct: 301 HVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLIIVNLLLLA 360

Query: 326 AGNFMEPSSIVLIMAPILFPVAMKLGIDPIHFGILIVVNMEVGMCHPPVGLNLYVASGIT 385
           AGNFMEPS+I+LIMAPILFP+A +LGIDPIH GI++VVNME+GM  PPVGLNL+V +GIT
Sbjct: 361 AGNFMEPSAILLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTAGIT 420

Query: 386 KMGITELTVAVWPWLLAMLGFLMVVTYWPPLSIWLP 421
              +  +  +  PWL  +L FL ++TY P +S++LP
Sbjct: 421 GRSMGWVIHSCIPWLALLLFFLALITYIPQISLFLP 456