Pairwise Alignments

Query, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

Subject, 678 a.a., exoribonuclease 2 from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (455), Expect = 3e-49
 Identities = 170/612 (27%), Positives = 284/612 (46%), Gaps = 42/612 (6%)

Query: 120 GDRVLAKLKRVRGEDVYEARAI------RIIGEARARVLGVFEPNPDGSGRLRPTSRKEK 173
           GD+V+A ++     +V E   +      R IG  +    G     PD   +L+  S K K
Sbjct: 57  GDKVVAFIRTENEREVAEPSELIEQSLTRFIGRVKL-FKGKLNVAPDHP-QLKKLSLKAK 114

Query: 174 AEYMVPRGETGDAKAGELVLADIMPGRLYGMRTASVKERMGLLGAPRSVS--LVAIHTND 231
            +  +      D + G+ V+A ++   L G     V+    +  A   ++   V +  ND
Sbjct: 115 TKKGL---NEADFQEGDWVVAHLVRHPLKGDDGFFVQISHKITDANDKIAPWWVTLAEND 171

Query: 232 VPFEFPEAALQQAAAEGPAPMNERTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKNPGG 291
           +P   P A +     +  A +  R DL ++P VTIDGE  +D DDA++A+  P+    G 
Sbjct: 172 LPNSEP-AGIDDWQLKDDADL-VREDLTALPFVTIDGESTKDMDDALYAQQLPN----GD 225

Query: 292 WHCMVAIADVSWYVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRP- 350
           +   +AIAD + Y+ P D +DK A +RG ++Y P R +PMLP +L++  CSL  ++ RP 
Sbjct: 226 FALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPA 285

Query: 351 -CMAVHFWLDA-LGNKLHHRFVRGMMRSVARLTYTQVQAAKDGTPDDRTGPL--LAPVIE 406
            C +V    D  +G+ +  RF    ++S ARL Y  V    +    ++  P   +A V+ 
Sbjct: 286 LCCSVTIRKDGVIGDDI--RFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVR 343

Query: 407 PLYGAWAALFRERKERGVLELDIPERKVTITPEGKVEAITERERFDSHRLIEDFMIMANV 466
            LY    A    R+   V+  D P+ +  ++ +  V AI    R  ++RL+E+ MI AN+
Sbjct: 344 DLYAFSQARANWRETHAVVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANI 403

Query: 467 CAAETLEKVHKPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQVLRPAHFNRILEAVEG 526
           CA +TL+      ++  H     EK+  + E ++      A  + L        L     
Sbjct: 404 CAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAETLATVEGFAALRRWLA 463

Query: 527 TANSHLVSEVILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRALISGLHL 586
           T  +  +   I + Q+ ++   + + HF +GL  YA +TSPIR+Y D++ HR L + + L
Sbjct: 464 TQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI-L 522

Query: 587 GEGGL--PADAVAEFAEWGEHISVTERRAATAEREAVDRYVTAFLADKVG--ATFAGKVS 642
           G+  +  P + V      GE +++  +    AER   D      LAD+      F  ++ 
Sbjct: 523 GKAPVQTPDETV------GEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIF 576

Query: 643 GVTRFGLFVTLDQTGADGLVP---ISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQKLDVE 699
            + R G+ V L + GA   +P   I    E    + E    L+ K     ++LG  L++ 
Sbjct: 577 DINRPGMRVRLLENGAMAFIPGALILDNKERIECNGEDGTVLIDKEV--VYKLGDVLEIV 634

Query: 700 LAEANTLTGSMV 711
           L E N    S+V
Sbjct: 635 LTEVNQENRSLV 646