Pairwise Alignments

Query, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  405 bits (1041), Expect = e-117
 Identities = 268/717 (37%), Positives = 381/717 (53%), Gaps = 35/717 (4%)

Query: 8   PIPSKQEILDFIRSQPGRVGKRELARAFNLRGSDKID-LKAILKELEREGVVERGQKRRF 66
           PIPS++ IL+F+      + + +L  A  L G ++ + L+  L+ +ER+G +   +++ +
Sbjct: 21  PIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCY 80

Query: 67  ASPGTLPDVGVVEIIGTDSDGELLARP---LNYEGEGRPPRIFMAPFRAGEAAVGVGDRV 123
           A P  L  V    +IG   DG    RP   LN EG+       + P       +  GD V
Sbjct: 81  ALPEKLEMVKGY-VIG-HKDGHGWVRPEGSLNKEGD------ILLPHHQMRTLIH-GDFV 131

Query: 124 LAKLKRVRGEDVYEARAIRIIGEARARVLGVFEPNPDGSGRLRPTSRKEKAEYMVPRGET 183
           L +          E R +RI+ E   +++G F     G   + P   +   + ++P    
Sbjct: 132 LVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEY-GYSYVVPDDSRIHHDILIPNDLR 190

Query: 184 GDAKAGELVLADIMPG--RLYGMRTASVKERMGLLGAPRSVSLVAIHTNDVPFEFPEAAL 241
             A+ G +V+ +I     R  GM    V E +G   AP   + +AI T+ +P E+P    
Sbjct: 191 AGARMGNVVVIEITDRGTRNRGMM-GKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVE 249

Query: 242 QQAAA---EGPAPMNE-RTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKNPGGWHCMVA 297
           QQ A    E P    + R DLR++PLVTIDGEDARDFDDAV+ E     K  GGW   VA
Sbjct: 250 QQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEA----KKGGGWRLWVA 305

Query: 298 IADVSWYVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMAVHFW 357
           IADVS+YVRP  +LDKEA  RGNSVYFP +VVPMLPE LSNG CSL P  DR CM     
Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365

Query: 358 LDALGNKLHHRFVRGMMRSVARLTYTQVQAAKDGTPDDRTG-PLLAPVIEPLYGAWAALF 416
           +   G    ++    +M S ARLTYT+V    +G  + R     L P +E L+  +  L 
Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425

Query: 417 RERKERGVLELDIPERKVTITPEGKVEAITERERFDSHRLIEDFMIMANVCAAETLEKVH 476
             R ERG +E +  E K     + K+E+I    R D+H+LIE+ MI+AN+ +A  +EK  
Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAK 485

Query: 477 KPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQVLRPAHFNRILEAVEGTANSHLVSEV 536
           +  +YR+H+ P +E+L G R+FL  + L L+ G    P  +  +++ +    +  L+  +
Sbjct: 486 EAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTM 545

Query: 537 ILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRALISGLHLGEG------- 589
           +LRS  QA Y+ +N GHFGL L RYAHFTSPIRRY DLL+HRA+   +   EG       
Sbjct: 546 LLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWT 605

Query: 590 --GLPADAVAEFAEWGEHISVTERRAATAEREAVDRYVTAFLADKVGATFAGKVSGVTRF 647
             G    +  +   +GE  S+TERRA  A RE  D     ++ D VG    G V+ VT F
Sbjct: 606 PTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSF 665

Query: 648 GLFVTLDQTGADGLVPISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQKLDVELAEAN 704
           G FV L +   DGLV ISTL  D+Y +D +   LVG+     ++LG  + V++   N
Sbjct: 666 GFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVN 722