Pairwise Alignments

Query, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

Subject, 886 a.a., ribonuclease R (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  331 bits (849), Expect = 9e-95
 Identities = 253/714 (35%), Positives = 361/714 (50%), Gaps = 43/714 (6%)

Query: 31  LARAFNLRGSDKIDLKAILKELEREGVVERGQKRRFASPGTLPDV-GVVEIIGTDSDGEL 89
           L R   L   +K  L+  L+ L+ EG + R +   +     +  V G +++  T   G +
Sbjct: 35  LLRILGLHRKEKRTLEESLEALQAEGRILRLRGGAWGLTDHMKMVTGTLQVQRTGM-GFV 93

Query: 90  LARPLNYEGEGRPPRIFMAPFRAGEAAVGVGDRVLAKL-KRVRGEDVYEARAIRIIGEAR 148
           L        + R   I++ P + GEA    GD+V+  L    RG +  E R +RI+    
Sbjct: 94  LPE------DRRRTDIYVHPTQMGEA--WHGDKVVVVLLPGGRGRNP-EGRIVRILERGL 144

Query: 149 ARVLGVFEPNPDGSGRL-RPTSRKEKAEYMVP-RGETGDAKAGELVLADIMPGRLY--GM 204
             +           G L R    + K  ++V   G  G  +  ++++  + PG     G+
Sbjct: 145 KEMPARVVKRMGRQGLLCRAADARIKVHFLVDVTGLEGKPQKDDILV--VSPGERVEDGL 202

Query: 205 RTASVKERMGLLGAPRSVS----LVAIHTNDVPFEFPEAALQQAAAEGPAP----MNERT 256
             A+       LG+   VS    LV I+ + VP EFP   L++AA   PAP      +R 
Sbjct: 203 WAATAVRH---LGSEDDVSVQERLVKIN-HGVPTEFPVPVLEEAATLPPAPGGGDFADRI 258

Query: 257 DLRSIPLVTIDGEDARDFDDAVFAEPDPDPKNPGGWHCMVAIADVSWYVRPGDSLDKEAF 316
           DLR +  VTIDG  ARDFDDA+  E     +   GW   VAIADVS YVRPG ++D+EA 
Sbjct: 259 DLRHMEFVTIDGARARDFDDAICVE-----EQGKGWRLWVAIADVSHYVRPGSAMDREAL 313

Query: 317 KRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMAVHFWLDALGNKLHHRFVRGMMRS 376
           +R NS YFP  V PMLPE LSNG CSL P   R  M    +    G+    +F   ++ S
Sbjct: 314 ERSNSYYFPQSVEPMLPEALSNGLCSLNPRVPRLAMVAEIYFFGEGSPGKCKFYPAVIES 373

Query: 377 VARLTYTQV-QAAKDGTPDDRT--GPLLAPVIEPLYGAWAALFRERKERGVLELDIPERK 433
            ARLTY QV +A   G  ++R    P+L P++E        L + R+ERG L+ D+PE +
Sbjct: 374 KARLTYGQVNRALLLGDEEERLVLRPVL-PMLEQAEKLARVLHQRRRERGSLDFDLPEPE 432

Query: 434 VTITPEGKVEAITERERFDSHRLIEDFMIMANVCAAETLEKVHKPCMYRIHDLPSQEKLD 493
           +     G+   I  + R   H+++E+FMI AN   A  L +     +YR+H  P  EKL 
Sbjct: 433 IAFNIYGETVDIRRKVRHFGHQIVEEFMIAANEAVARFLTEKEADFLYRVHPEPEPEKLS 492

Query: 494 GLREFLSSMDLKLAKGQVLRPAHFNRILEAVEGTANSHLVSEVILRSQAQAQYSPENIGH 553
            L + L+  D+     +         +L+   G+A   L+S + LR+  QA+YSPE+ GH
Sbjct: 493 ALFKVLAGTDIAQGLPREASAGALQTVLQKAHGSAQEFLISRLTLRTMMQARYSPEHEGH 552

Query: 554 FGLGLARYAHFTSPIRRYADLLVHRALISGLHLGEGGLPADAVAEFAEWGEHISVTERRA 613
           FGL  A Y HFTSPIRRYADL+VHRAL   L  G+ G P  A  +     + +S  ER+A
Sbjct: 553 FGLASACYCHFTSPIRRYADLVVHRALKRALG-GDPG-PTPAGGKLVAIADQLSQHERKA 610

Query: 614 ATAEREAVDRYVTAFLADKVGATFAGKVSGVTRFGLFVTLDQTGADGLVPISTLPEDFYV 673
             AERE + R     L  +VG T  G +S +  FG FV L++  ADG+V +S+L +D+Y 
Sbjct: 611 MEAEREILKRLTVLLLRSRVGETLTGVISSILDFGFFVELNEVLADGMVRLSSLDDDYYA 670

Query: 674 HDEVHHCLVGKRTRKTFQLGQKLDVELAEANTLTGSMVFRLGGAGERGLRPPRP 727
                  L G+RT +TF+LGQ++ V LA+ N   G +   L    E G   P P
Sbjct: 671 FIPERQELRGERTGRTFRLGQQVKVRLADVN--VGRLEVNLELVREEGDDTPVP 722