Pairwise Alignments

Query, 846 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

Subject, 1807 a.a., multi-sensor signal transduction histidine kinase from Synechococcus elongatus PCC 7942

 Score =  117 bits (292), Expect = 8e-30
 Identities = 103/400 (25%), Positives = 180/400 (45%), Gaps = 24/400 (6%)

Query: 439  RALEERVRQRTQELAQSNAALATEIAERRAAEDRVREREGQLRAILDAAPFPMVVASFPE 498
            R   + VR  T  + + + A   ++++R+ A+   +    +LR  L++            
Sbjct: 1419 RVTGQAVRDETGAIVRISGAFQ-DVSDRKRAQREAQRLADRLRTTLESITDGFYTLD-EN 1476

Query: 499  GRVMFLNEPACELLNVSQDRAIGQQASDFYSDADERRT--LIDQLGLSGAVLGVEMRVRR 556
             R  +LN+   + L V+ +  +GQ     +  + E     +  Q   +G     E     
Sbjct: 1477 WRFSYLNQEGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGEAAHFETYYEP 1536

Query: 557  MPGVERWVLLSAVRFVYNGQDSTLVCLNDITTRKDLENMLRLSGRRAEAALEAERQAMRE 616
                 RW  + A    Y  +D   V   D++ R+  E  LR++ R  E       ++ +E
Sbjct: 1537 FG---RWFEVHA----YPSEDGLAVYFRDVSERRQTEQNLRITLRELE-------RSNQE 1582

Query: 617  QRNFLAMVSHEFRVPLAIIEAAS-QLLGIYLRANDDARDEVSKIRRAVRRMSELIDVCLA 675
             + F  + SH+ + PL  I+A S +L+      +D+++D + ++  A  RM  LI   L 
Sbjct: 1583 LQEFAFVASHDLQEPLRKIQAFSDRLIARTSNLDDESQDYLRRMASAAGRMQTLIIDLLN 1642

Query: 676  DDRLDSSAMRLQLDRVDVARMLSDICDDKRPFAGYRDLIIQAPQRAMAMVDPTLLRIAFS 735
              R+++  + LQ   +D  ++L D+  D          I++         D    R  F 
Sbjct: 1643 YSRVNTRGLPLQPLSLD--QVLDDVLVDMEASLDQASAIVERQPLPTIQGDAGQFRQVFQ 1700

Query: 736  NLIDNALKFSPADSPVTILVTAD-SDAVRVRVCDQGPGIALDEQ--PRIFEKFYRSTKSD 792
            NL+ NALKF  AD+   I + ++ ++A ++R+C    GI  DE+   RIF  F R    D
Sbjct: 1701 NLLSNALKFQSADNQPLIQIYSELTEAGQLRLCIADNGIGFDEKYLDRIFNPFQRLHSRD 1760

Query: 793  RVRGAGLGLYIVKRIMDLHGAAISVDSQGGAGTIFDVWLP 832
               G G+GL IVK+I++ HGA I+  S  G G++F +  P
Sbjct: 1761 AYAGTGIGLAIVKKIIERHGATITAKSIPGQGSVFFITFP 1800



 Score = 28.1 bits (61), Expect = 0.005
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 11/156 (7%)

Query: 457 AALATEIAERRAAEDRVREREGQLRAILDAAPFPMVVASFP-EGRVMFLNEPACELLNVS 515
           A LA     R     ++++ E + R++    P    V SF  +G    +N    E+L+  
Sbjct: 767 AQLAAIAFARSLDRQQLQDSEQRFRSLFTFNPD--AVYSFDLQGIYQSMNSAGFEILDRQ 824

Query: 516 QDRAIGQQASD--FYSDADERRTLIDQLGLSGAVLGVEMRVRRMPGVERWVLLSAVRFVY 573
            D+ IG+  SD     D ++ +   DQ    G     E+R+    G   ++ +S    V 
Sbjct: 825 ADQIIGKHFSDVVISEDLEKCQQHFDQ-ACKGEAQHYEIRINGRNGQLFYLDVSKFPIVV 883

Query: 574 NGQ-DSTLVCLNDITTRK----DLENMLRLSGRRAE 604
           N +         DIT RK    DL+  L  S ++ E
Sbjct: 884 NNKIVGVFGIAKDITQRKQITADLQQALMQSNKQTE 919