Pairwise Alignments

Query, 352 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

Subject, 341 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (456), Expect = 5e-50
 Identities = 108/340 (31%), Positives = 183/340 (53%), Gaps = 10/340 (2%)

Query: 3   SPDTLDVAAHCARAALAMMERHKVPPHPENYAIWYAYVAGRNPDLTAAIDAILQSGKKFT 62
           S D L  AA   + A+ +M +H++P  P NYA+WY YV  +N  L A +D ++       
Sbjct: 2   SRDLLQTAALNLKKAVPLMLKHQIPTTPINYALWYTYVGEQNLALNAQLDTVIAHYNTCP 61

Query: 63  AKVNDELYERFAVFPQDTAELREVGQRVEEAVGRVLEYLSNANQGTSNYGAALEDFSGKL 122
              ++ LY ++   P +   +R++   +E     + + + + +  T+ +   +     KL
Sbjct: 62  PVSSELLYRQYVADPVEL-NVRDMRLNLEAMATELSQSIKDTSLDTTEFQTCINSNFSKL 120

Query: 123 ADGPSAAGLS-----ELISGILAETKVMADLNRQLEQRLENSSNEVARLRNHLDDLKREA 177
            +G     LS     +L+  ++ E+  +      L  +L+ +  E+  L+  L+  +++ 
Sbjct: 121 -NGIEEGALSVEQVLDLVRNLVKESDNIRSSTEFLTTQLQKAQTEIDALKQKLEKTEKDV 179

Query: 178 STDALTQLANRKLFDHSLNLAVLDARAADAPLSLLMIDIDHFKQFNDTYGHQLGDQVLKL 237
             DALT   NR+ FD   ++A + A+A +    L+++DIDHFK FND YGHQLGDQVLK 
Sbjct: 180 LYDALTGCLNRRAFD--ADIAGMIAQAPEGTC-LILVDIDHFKAFNDNYGHQLGDQVLKA 236

Query: 238 VARSLSEVAQAKDTAARYGGEEFAVILPATPLEKSMEVAETIRNQVSTKRLTNRRTGQVL 297
           VA+ L E  +      R+GGEEFA+I+P + L  + ++AE +R  +    L +RR  Q++
Sbjct: 237 VAKRLQEACRDGSKLYRFGGEEFAIIVPKSQLRITRQLAEAMRRGLEKLCLKDRRKDQLV 296

Query: 298 GQVTLSIGAALLREAEAPDSLVHRADEAMYLAKRDGRNRV 337
             +T S G A  +E ++   L+ + D+ +Y AKR GRNRV
Sbjct: 297 DNITASFGVAQWQERQSVVQLIEKTDKLLYEAKRLGRNRV 336