Pairwise Alignments
Query, 387 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1
Subject, 562 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H
Score = 78.6 bits (192), Expect = 4e-19
Identities = 83/336 (24%), Positives = 144/336 (42%), Gaps = 24/336 (7%)
Query: 10 FAAVGLVGLAAVAMALVGIRSMATYHQHVMEMQSASQRAVIGEKVNGLINAVVMDSRGVY 69
F ++ L+ + A ++LV +R+++ + ++E S RA+ ++ V++ R
Sbjct: 17 FCSLALLFVGAGIISLVQLRAVSGATEIIVENWLPSIRALAALELQ------VIEHRRFE 70
Query: 70 MSR----DAREAEKYAPAILKNVAEISRLMADWTALVPEAE-RGAFKPAVEQAAQFAAFR 124
MS DA I K I++ A + L+ AE R + Q + A
Sbjct: 71 MSHIMTTDAPGMAAEDERIRKQRELIAKTQATYEKLINSAEERAIYDRFATQWTTYLALT 130
Query: 125 AELVRLGREVSTAEARTFGDNDANRANRQALNKQIEALAAANSAKVSDLVQGLDEFYESR 184
+++ L R EAR ++ R A N+ AL A + +E Y+S
Sbjct: 131 EQVIELSRTNKNTEARDMQLGES----RAAFNQMRAALVEAIDLNNKGAKKAAEEAYQSD 186
Query: 185 LQAMIWL-----AVLGLAAGIGWAAWTAFKRVSQPINDMTATMRELAGGHLAVEIPSVEA 239
A + + +LGL A +++PI +T MR LA G ++IP+ +
Sbjct: 187 SDAQVLIITVTVVILGLVVFFTLLLRAA---IAKPIVSITTIMRRLAEGERTIDIPARDR 243
Query: 240 HDEIGEMARAVRVFRDAMRAAEAMRQAQEKEREAAFAERVSALQSMAETVELETRAAVEQ 299
DEIG+MA AV VF+D AE + Q ER A +R ++++ T + +
Sbjct: 244 KDEIGDMAGAVEVFKDNAIRAEQLENEQRAER-ANREKRSQTIETLMGTFDRAVGNVLAV 302
Query: 300 VAAQTALMAENAGQMANSAGAVGGSSQSVAAAASQA 335
VA M A M ++A + +V++A +A
Sbjct: 303 VAGAATEMESTAQAMTSNAEQTSRQAIAVSSATEEA 338
Score = 33.5 bits (75), Expect = 2e-05
Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 46/309 (14%)
Query: 28 IRSMATYHQHVMEMQSASQRAVIGEKVNGLINAVVMDSRGVYMSRDAREAEKYAPAILKN 87
IR+ ++ E + +R+ E + G + V + V ++ A E E A A+ N
Sbjct: 262 IRAEQLENEQRAERANREKRSQTIETLMGTFDRAVGNVLAV-VAGAATEMESTAQAMTSN 320
Query: 88 VAEISRLMADWTALVPEAERGAFKPAVEQAAQFAAFRAELVRLGREVSTAEARTFGDNDA 147
+ SR ++ EA G V A++ A A + +GR+V +
Sbjct: 321 AEQTSRQAIAVSSATEEASAGV--QTVASASEELA--ASISEIGRQVE----------QS 366
Query: 148 NRANRQALNKQIEALAAANSAKVSDLVQGLDEFYESRLQAMIWLAVLGLAAGIGWAAWTA 207
N A+R LA+ +A+ S V GL E +R+ ++ L + +A A A
Sbjct: 367 NAASR---------LASEEAARASVTVSGLAET-STRIGTVVGL-ITHIANQTNLLALNA 415
Query: 208 FKRVSQPINDMTATMRELAGGHLAVEIPSVEAHDEIGEMARAVRVFRDAMRAAEAMRQAQ 267
++ D +AG ++ + +A +EI AV+ +A +QA
Sbjct: 416 TIEAARA-GDAGKGFAVVAGEVKSLANQTAKATEEISAQIGAVQ---------QATQQAV 465
Query: 268 EKEREAAFAERVSALQSMAETVELETR--AAVEQVAAQTALMAENAGQMANSAGAVGGSS 325
E A A V ++ ET + T +AVE+ AA T +A+N ++A V S
Sbjct: 466 E-----AIATIVRRIE---ETTHISTAIASAVEEQAAATNEIAQNVQRVAAGTQEVSASI 517
Query: 326 QSVAAAASQ 334
V AA +
Sbjct: 518 GGVTQAADE 526
Score = 32.7 bits (73), Expect = 3e-05
Identities = 61/293 (20%), Positives = 107/293 (36%), Gaps = 63/293 (21%)
Query: 40 EMQSASQRAVIGEKVNGLINAVVMDSRGVYMSRDAREAEKYAPAILKNVAEISRLMADWT 99
EM+S +Q A+ A+ + S S + + + +++EI R +
Sbjct: 309 EMESTAQ-AMTSNAEQTSRQAIAVSSATEEASAGVQTVASASEELAASISEIGRQV---- 363
Query: 100 ALVPEAERGAFKPAVEQAAQFAAFRAELVRLGREVSTAEARTFGDNDANRANRQALNKQI 159
E A + A E+AA+ + + L + T + AN+ N ALN I
Sbjct: 364 ----EQSNAASRLASEEAARASVTVSGLAETSTRIGTVVGLI--THIANQTNLLALNATI 417
Query: 160 EALAAANSAKVSDLVQGLDEFYESRLQAMIWLAVLGLAAGIGWAAWTAFKRVSQPINDMT 219
EA A ++ K +V G V N
Sbjct: 418 EAARAGDAGKGFAVVAG---------------------------------EVKSLANQTA 444
Query: 220 ATMRELAGGHLAVEIPSVEAHDEIGEMARAVRVFRDAMRAAEAMRQAQEKEREAAFAERV 279
E++ AV+ + +A + I A VR + + A+ A E E+
Sbjct: 445 KATEEISAQIGAVQQATQQAVEAI---ATIVRRIEETTHISTAIASAVE--------EQA 493
Query: 280 SALQSMAETVELETRAAVEQVAAQTALMAENAGQMANSAGAVGGSSQSVAAAA 332
+A +A+ V++VAA T ++ + G + +A GG++Q V +AA
Sbjct: 494 AATNEIAQN--------VQRVAAGTQEVSASIGGVTQAADETGGAAQQVLSAA 538