Pairwise Alignments

Query, 340 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score =  145 bits (365), Expect = 5e-39
 Identities = 114/356 (32%), Positives = 164/356 (46%), Gaps = 25/356 (7%)

Query: 1   MADPFAAAFARIEAGDLDGAEEVYRQAVRDGAQDPLLRMCLGQLLMLRGDYRRGLPLNEF 60
           +A  F  A    + GD   A + Y+Q +     +P +R       +  GD+  GLP  E 
Sbjct: 109 VAARFNRAITLQKLGDPATALQDYQQLLEADPDNPEIRYNSAHAALAIGDWDFGLPAYEA 168

Query: 61  RPL---------SPVAGTRWRGQPLKGETVLILGEQGFGDNIQFVRYAEPLARR--GARV 109
           R           + +   RW+GQ L  +T+L+ GEQGFGD +   R+   L +R   AR+
Sbjct: 169 RCQQLQHFPEIEASLKLPRWQGQDLDQQTLLVWGEQGFGDRLMGARWIPLLRQRYPQARI 228

Query: 110 VVGCQTGIGRLLST-APGVSQVVESGQGMDRPDLVIPLMSLPYVFGTTVQTIPARVPYLT 168
           V      + RL  T A     V+  G  +   D  +PL+SL  +F +    +P   PY  
Sbjct: 229 VWQTSPSLVRLFQTLADDRLMVLAEGAELPVCDWQVPLLSLMLIFQSDRNRLPWHGPYFF 288

Query: 169 AEPAAVAVWRERLSPYAGLKVGLVW--GGNP--EAAYDARRSPGLDPYLGLLDLPGVTFF 224
                     +R       ++GLVW  G NP   A + A +S  L     +L + G    
Sbjct: 289 PHKGDFLPASDRP------RLGLVWSAGRNPAQSAEFAANKSCPLALLWSVLSVSGWDVV 342

Query: 225 SLQKGPAAAALAGRSMPANFVDLGPELTDFDQSAAVMESLDLVISSCTSPAHLAGALGRP 284
           SLQ   A   L   S P   +DLG E+ DF  +   +  LDL+I+  T+ AHL G +G P
Sbjct: 343 SLQVDEARQDLQTLSDP--LLDLGSEIGDFQDTVDRLAHLDLLITVDTAIAHLGGMIGLP 400

Query: 285 VWVVLASFPDWRWLLEREDSPWYPTARLFRAGRGEGWDPVLGRVRTALAALAAPSP 340
            WV+L + PDWRW L    +PWYP+ RLFR      W   +  ++TALA    P+P
Sbjct: 401 TWVLLPAVPDWRWELSGATTPWYPSLRLFRQPSPGDWSGAIAELQTALAEF-QPAP 455



 Score =  125 bits (313), Expect = 6e-33
 Identities = 99/336 (29%), Positives = 154/336 (45%), Gaps = 34/336 (10%)

Query: 24  YRQAVRDGAQDPLLRMCLGQL-------------LMLRGDYRRGLPLNEFRPLSPVAGTR 70
           Y  A     + PLLR   G L             L +R D++  L   ++R L+P     
Sbjct: 591 YDAAAAIAPESPLLRCNRGFLQLHWGNWLQGWPDLEVRFDFQSDLDPFQYRQLAPA---- 646

Query: 71  WRGQPLKGETVLILGEQGFGDNIQFVRYAEPLARRG--ARVVVGCQTGIGRLLST-APGV 127
           W+G+PL  +T+LI GEQG GD++ F R+   L  +   A+++      + RL+   A   
Sbjct: 647 WQGEPLGQQTLLIWGEQGLGDHLLFCRWLPELRLQHPQAQLIFVTDPLLERLMQQLADDR 706

Query: 128 SQVVESGQGMDRPDLVIPLMSLPYVFGTTVQTIPARVPYLTAEPAAVAVWRERLSPYAGL 187
            Q+    + +   D  + LMSLP +  TT  T+P R  Y  +    +            L
Sbjct: 707 LQICCLDEPVPACDRQVALMSLPAIAQTTPATVPWRGAYFQSSMPPLRCAET-------L 759

Query: 188 KVGLVWGG----NPEAA--YDARRSPGLDPYLGLLDLPGVTFFSLQKGPAAAALAG-RSM 240
           +VG VW      +PE A  Y  +  P  +    LL +P V ++S Q G   A L      
Sbjct: 760 QVGFVWASGKRSSPETARLYREKSCPLNELLPALLAVPAVDYYSFQVGADVAELQPWLEQ 819

Query: 241 PANFVDLGPELTDFDQSAAVMESLDLVISSCTSPAHLAGALGRPVWVVLASFPDWRWLLE 300
                DL  +L DF  +A  +  +D++IS  T+ A+LAG +  PVW +L    +WRW L 
Sbjct: 820 SDRLFDLSEQLQDFQDTADWLAEMDVLISVDTAVANLAGMMALPVWTLLPEPANWRWGLT 879

Query: 301 REDSPWYPTARLFRAGRGEGWDPVLGRVRTALAALA 336
              +PWYP+ RL+R  +   W   + +++  L  L+
Sbjct: 880 GHTTPWYPSMRLYRQTQRGNWSGAIAQIQQDLQQLS 915



 Score = 28.9 bits (63), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 1   MADPFAAAFARIEAGDLDGAEEVYRQAVRDGAQDPLLRMCLGQLLMLRGDY 51
           +AD   AA     A +   AE + RQAV    ++P     LG+ L  +GDY
Sbjct: 466 IADWIQAADRAFTAQNWPRAEWLIRQAVAIAPEEPSFHRALGRSLKQQGDY 516