Pairwise Alignments

Query, 586 a.a., PAS domain-containing sensor histidine kinase from Magnetospirillum magneticum AMB-1

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (432), Expect = 3e-46
 Identities = 115/346 (33%), Positives = 183/346 (52%), Gaps = 29/346 (8%)

Query: 238  LGFESDTLRTTSHEWLELVHPEDRDRYQATLVRHLKGEDAHFECEYRVTDRDGRWRWVLA 297
            +G   D LR+T     +++  +D+D  +A     ++G+  H+  E       G   W+  
Sbjct: 937  MGLSRDELRSTPI--FDVLSAQDKDVAKAQFKELVEGKIDHYRGERSFVRPSGEPLWMTV 994

Query: 298  RGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANEQLEQRVVERTRELDLARCQAEEA 357
                +LD+       V S+ D+TE                      + EL +A+ +A+ A
Sbjct: 995  NVSTLLDSQNQFESAVVSMVDMTELKLL------------------SDELLVAKDEADAA 1036

Query: 358  NRCKSEFLANMSHELRTPLNAIIGFSDVMRSGVFGPVGNARYGEYIGWIWDSGHHLLRII 417
            ++ K +FLANMSHE+RTP+NAIIG S +          + +   Y+  I  +   LL II
Sbjct: 1037 SKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL----DKKQKNYLEKIERASQSLLSII 1092

Query: 418  NDILDLAKVEVGRFDLSRESTPVLPLLESAIRLVSERATRAEVNVGCKAEPGLGDAML-D 476
            NDILD +K+E G+ D+   S  +  +LE    + SERA + ++ +     P +   +L D
Sbjct: 1093 NDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGD 1152

Query: 477  PLRMKQVLLNLLSNAVKFTPAGG---SVSL-EARHEGTDLVLIVADTGIGMDEESLEKAL 532
            PLR+ QVL+NL++NA+KFT  G    S+SL E +++   L   V D+GIG+ +E   K  
Sbjct: 1153 PLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLF 1212

Query: 533  QPFVQVESSLSRRYAGTGLGLPLAKSFSELHGGSLDLVSRPGEGTT 578
            + F Q ++S +R+Y GTGLGL ++K   EL GGS+ + S+ G G+T
Sbjct: 1213 KSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGST 1258



 Score = 49.3 bits (116), Expect = 1e-09
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 229 YLSARLLSILGFE-SDTLRTTSHEWLELVHPEDRDRYQATLVRHLKGEDAHFECEYRVTD 287
           Y+S  +  I G+  S  +      +  L+  +DR      + R L  ++  FE EYR+  
Sbjct: 668 YVSDNIAEITGYAASQFIENRQRTFTSLILEDDRALCNQHIERALAQQET-FEVEYRIRH 726

Query: 288 RDGRWRWVLARGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANEQL 336
           RDG  RWV  +G A    +G+     GSI DVTE       ++ + +QL
Sbjct: 727 RDGSIRWVHEKGKASYSEEGLPLWFDGSIDDVTESKLAIDEIEASRQQL 775