Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 98/404 (24%), Positives = 169/404 (41%), Gaps = 34/404 (8%)

Query: 41  LTDSVVKTLKPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHTIGAYP 100
           LTD+ VK++KP      W+ +SD G  GL L V P+G K+W  K  +  +     IG++P
Sbjct: 6   LTDAKVKSVKP--ADRDWK-LSDGG--GLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFP 60

Query: 101 AVSLGEARKRAEAYLATARDGASP------------DELDARQRAETMTVTMAHSEYIEA 148
            VSL EAR   E   A  + G  P            + L  R+RA+  +       Y+  
Sbjct: 61  QVSLAEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAE 120

Query: 149 MRSSLRASTISLKKTMFKTHVEGALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSE 208
           ++     S+   K++  + ++        +  +    +  ++    A G    A  V  +
Sbjct: 121 IKPVFAHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHG-AWAAIHVKGD 179

Query: 209 VMALLRWCEQKGYVDG--VPSARKKDVRAATGGAKELARRRVLSEGEIIAVWNLTANMGD 266
           + A+  +   +G V+   +PS R      A+     + R ++    + +  +        
Sbjct: 180 LSAIFEFAVVRGLVEANPIPSLRGLLRVPASESKAAMTREQIQKFYQALRGYRGYPE--- 236

Query: 267 LTGDFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPASRYKTGYSHTVPLPKQAMDILR 326
            T   LRL+ LT  R  E     W E D + ++W  PA++ K    H  PL  QA+ +L+
Sbjct: 237 -TALCLRLIALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLK 295

Query: 327 S-RWVEGATGYVL---AGRGENKPFNGAASAVRRLRKELGGKADFTLHDIRRTLRTGLAR 382
             + + G   Y+    +G+G   P N    A+R +    G     T H  R T  T    
Sbjct: 296 DLQRITGGGRYLFPHRSGKGFTTP-NRLTYAMRDMNLGRG----TTPHCWRTTFSTWANE 350

Query: 383 MGIDETTAEMVIGHIPQGIVK-VYDQHDRMEERRTALKRWAEYV 425
            G      E  + H+    V+  Y++   +++RR+ L+ WA Y+
Sbjct: 351 NGFRPDAIERQLAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 394