Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  100 bits (250), Expect = 7e-26
 Identities = 91/408 (22%), Positives = 162/408 (39%), Gaps = 37/408 (9%)

Query: 41  LTDSVVKTLKPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKV--TVGAQRVRHTIGA 98
           LTD  +K  KP       +E +     GLRLR+ P+G K W          +R   + G 
Sbjct: 8   LTDKEIKASKPRE-----KEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGM 62

Query: 99  YPAVSLGEARKRAEAYLATARDGASPDELDARQRAETMTVTMAHSEYIEAMRSSLRASTI 158
           YP +SL +ARK   +       G  P +   RQ+         H E  E    ++     
Sbjct: 63  YPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQ-------QVHKEIHEHTFENVTKDWF 115

Query: 159 SLKKT------------MFKTHVEGALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVF 206
           ++K+               + H+   +  + ++ +   ++++++  + AKG      R+ 
Sbjct: 116 AIKQNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLT 175

Query: 207 SEVMALLRWCEQKGYVDGVPSARKKDVRAATGGAKELARRRVLSEGEIIAVWNLTANMG- 265
             +  ++ +    G +   P      ++AA    K+      L+  E+  + +  AN   
Sbjct: 176 QRLNEVMNFATNCGLIQANPLT---GIKAAFKKPKK-ENMAALTPAELPELMSAIANASI 231

Query: 266 -DLTGDFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPASRYKTGYSHTVPLPKQAMDI 324
              T   L   L T  R  E     W E++ +  +WTIPA R K    H +PL +Q + +
Sbjct: 232 KRTTRCLLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLAL 291

Query: 325 LR-SRWVEGATGYVL-AGRGENKPFNGAASAVRRLRKELGGKADFTLHDIRRTLRTGLAR 382
           L   + + G   ++  + R   KP N  +       K +G       H +R    T L  
Sbjct: 292 LEVMKPISGHRDFIFPSDRAPKKPCN--SQTANMALKRMGFAGRLVSHGLRSLASTTLNE 349

Query: 383 MGIDETTAEMVIGHIPQGIVK-VYDQHDRMEERRTALKRWAEYVERVA 429
            G D    E  + H+    V+  Y++ D +E R+  +  W+E++E  A
Sbjct: 350 QGFDPDLVESALAHVDDNQVRSAYNRTDYLERRKPMMCWWSEHIEEAA 397