Pairwise Alignments

Query, 816 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Magnetospirillum magneticum AMB-1

Subject, 798 a.a., DNA gyrase, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  674 bits (1739), Expect = 0.0
 Identities = 386/811 (47%), Positives = 506/811 (62%), Gaps = 36/811 (4%)

Query: 21  YGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVVLN 80
           Y A SI +L GL AVRKRP MYIG TD   GLH ++YE VDN++DE M GF  +  V L+
Sbjct: 9   YTADSITILEGLSAVRKRPAMYIGSTD-ARGLHHLVYEVVDNSIDEAMAGFCSKVVVKLH 67

Query: 81  ADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISVVN 140
            D SV V+DNGRGIPVD+HP+EG  A EV +TKLHAGGKF+ N+ ++S GLHGVG+S VN
Sbjct: 68  LDNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHGVGVSCVN 127

Query: 141 ALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFLPSKGTFSHTDFDF 200
           ALSEWLE+R+ R G+ +  R+  G P+  L V+G   +  GT V F P +  F    F +
Sbjct: 128 ALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG-ASEGHGTTVRFKPDEEIFETNQFSY 186

Query: 201 DTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAPILI 260
           +T+  R  EL++LN    +   DER  E+       EGG++ FV+ L+  +  +H  +  
Sbjct: 187 ETLRKRFEELSYLNRGLEIEFIDERSGESHTFFA--EGGIRQFVKDLNSGETGIHPIVAG 244

Query: 261 AAEKDVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTINAYAN-DSGI 319
             + D V ++ ++++   Y E  L F NN+  K+GGTHLAGF+ ALTR IN Y    + +
Sbjct: 245 EGKTDGVVVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAINGYVKGQADL 304

Query: 320 AKKEK-VNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEWF 378
            KK K   L+GDD+REGLT V+SVK+P P+F  Q K KL +SE+  +V  +V ++L   F
Sbjct: 305 TKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAGIVYDRLNVHF 364

Query: 379 EEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSELF 438
           EE+P + R ++ K V+AA AR+AAR+A+EL RRKG L    LPGKLADCQ +DPALSELF
Sbjct: 365 EENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSKDPALSELF 424

Query: 439 IVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGRE 498
           IVEGDSAGGSAKQGR+ + QAILPL+GKILN ER RFDKML++ E+  LI AMG GIG +
Sbjct: 425 IVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALITAMGAGIGED 484

Query: 499 DFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRGQ 558
           D + DK RYHKI+IMTDADVDG+HIRTLLLTFF+RQ   LIE GYLYIAQPPLYRA   +
Sbjct: 485 DTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQPPLYRAHNSR 544

Query: 559 SEVYLKDDRALEEYLIDGGLADAVLRMADGTQLASIDLRALVEQARSVRNLLTPLSRRVP 618
            E ++KDD  L  +L+     D  +R   G      D+       R +R++ T  +R   
Sbjct: 545 MERFIKDDAELNNFLLTRVSEDVEVRTPGGCSFKGTDI------VRLMRSIETVAAR--- 595

Query: 619 LKLVEQAAIADALDSSLLTDAVR----------GPAIVQGLAQRLDALETHLERGWTG-- 666
           ++ VE A I+  L    L    R          G  +   LA R  ++   LE G  G  
Sbjct: 596 IRDVETAGISRELFLGFLEYGERITPEWFEQHDGNGLRPWLAGRGYSMTAELESGDEGDR 655

Query: 667 TWVEGDGYTFSRTLRGVTETHALDSAVIRSAEARRLHELAPRLRETFDRPAALMVRERET 726
           T+V  +     RT  G        S + RS+      +    +R      +  + R+ ET
Sbjct: 656 TFVVFENTNGHRTRIG---AEFFGSRMYRSS-----WDALEAIRSECGGLSFTLDRKGET 707

Query: 727 VLSGPV-ALVTAVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDA 785
           V  G +  L   V E+ RRG+ IQRYKGLGEMNPEQLW TT++P+ R+LLQV +  A++A
Sbjct: 708 VGEGDMFDLQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIEDAEEA 767

Query: 786 EQVFSTLMGDVVEPRRDFIQTNALKVSNLDV 816
              F  LMGD VEPRR+FI  NAL V  LD+
Sbjct: 768 SDAFEQLMGDRVEPRREFIVRNALAVQELDI 798