Pairwise Alignments

Query, 393 a.a., DNA polymerase IV from Magnetospirillum magneticum AMB-1

Subject, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (480), Expect = 1e-52
 Identities = 125/339 (36%), Positives = 191/339 (56%), Gaps = 12/339 (3%)

Query: 45  IAHIDCDAFYASVEKRDNPALADKPVIVG-HPGGRGVVTTACYVARKFGPRSAMPMFKAL 103
           I H+D D F+A+VE RDNPA  +  + VG H   RGV++T  Y ARKFG RSAMP  +AL
Sbjct: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67

Query: 104 ELCPHAVVIPPNIAKYKQVSAQIRALFEKATPLVEPLSLDEAYLDLSPGVRLVDRPAAVL 163
           +LCP   V+P  ++ YK VS QI+ +F++ T L+EPLSLDEAYLD+S       + +A L
Sbjct: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAY--QGSATL 125

Query: 164 LAR-LARAIRLQVGITVSVGLSYNKFLAKMASDLNKPEGFSVIGREEAEAFLAPRPVTAL 222
           +A+ + R I  ++ +T S G++  KFLAK+ASDLNKP+G  V+  ++ +  +   P+  +
Sbjct: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185

Query: 223 FGIGAATAARMADQGITTIAQLQALPETEFVARWGKFGRRLAGMVHGIDHRPVNPDRPAK 282
            G+G     ++   G+   A ++     + + ++G+ G  L    HGID R V  +R  K
Sbjct: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245

Query: 283 SVSTETTFARDIRDAKALTEAL-PPLAEGVARRLERVNLAGRTVV---LKLKTADFKVIT 338
           SV  E TF+++I   +   + +   L   +  RL R +   R ++   +K+K ADF+  T
Sbjct: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAH-PQRGIIKQGIKVKFADFQQTT 304

Query: 339 RHLRLPDPTGRAETIVRAGLALLERQMDGRAFRLLGIGV 377
             +    P    +        +L RQ  GR  RLLG+ V
Sbjct: 305 --IEHVHPALELDYFHELLEQVLTRQ-QGREIRLLGLSV 340