Pairwise Alignments

Query, 407 a.a., nitrate ABC transporter from Magnetospirillum magneticum AMB-1

Subject, 466 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 52.4 bits (124), Expect = 3e-11
 Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 41/215 (19%)

Query: 34  GLDVELSREASWASIRDKVAVGALDGAQMLAPMPLAMSLGLSPIRVPMAVGMALNLGGNT 93
           GL +   R  SWA +   +  G LD A ++AP+ L++    +P+R  M            
Sbjct: 212 GLPLLSRRYLSWAVLAGDLTHGRLDAAFIMAPLALSLRGAGAPLRYVMD----------- 260

Query: 94  ITIGNALWERMEAADPQSMAARPVSARALKRVIEADRAVGKPPMTFATVYPYSPHAAEL- 152
                                   SA +L R  E  R +G P         +S H   L 
Sbjct: 261 -------------------GHHEGSALSLSRQAERRRVMGLPGA-------FSTHRVLLA 294

Query: 153 RLWMEAAGIDTQAEVRFTVVPPPQMISFLSAGNIDGYCVGEPWGSLAVRMNLGRIAATSG 212
            L +E +G+     +   VV P  +I+ +    I  +   EPW +  +   +G  A  S 
Sbjct: 295 HLGLECSGVSNLPTL---VVNPSSVIASMQHNEIGAFFCAEPWSTKCLHEGVGYTALRSA 351

Query: 213 DIFAGRLEKVFAVTQTWAETHPETHLAVLQALISA 247
           DI    L  + AV Q +A+ H +     ++AL++A
Sbjct: 352 DIMPHHLCCILAVRQPFADRHGQVVADYVRALLAA 386