Pairwise Alignments

Query, 184 a.a., sigma-70 family RNA polymerase sigma factor from Pantoea sp. MT58

Subject, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 7/176 (3%)

Query: 13  ALMARAQAGDRAAYNQLLKAMVPAIRALVCKKI-RDEVLVEDVIQETLLAIHRVRHTYDP 71
           AL+ +   GD+ AY   L  +   +RA +  ++ R    +ED++Q+ LLA+H  RHTY P
Sbjct: 3   ALLLQGLTGDQLAYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQP 62

Query: 72  QRPILPWVAAIASARTIDTLRQHGR---RQEVQDEEALQKRPAESSELQSDNDILSGYLD 128
           Q+P+  WV AIA  +  D LR   R   R +V D++A     +E    ++  D L+  L 
Sbjct: 63  QQPLTAWVQAIARYKLADHLRSVSRRDARHDVLDDDAQLFAVSEVESAEASRD-LTKLLK 121

Query: 129 ILPLRQREIVESVHLREQSLAQAAAETHQSLSAVKSLLHRAMVNLRKY--GRGVHE 182
            LP RQR  +  V L   S+ + A  T  S SAVK  +HR +  L +   G   HE
Sbjct: 122 QLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGANNHE 177