Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

Subject, 497 a.a., NusA antitermination factor from Kangiella aquimarina DSM 16071

 Score =  639 bits (1647), Expect = 0.0
 Identities = 327/492 (66%), Positives = 399/492 (81%), Gaps = 3/492 (0%)

Query: 2   NKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRR 61
           NKEIL VVEAVSNEK +  E IF A+E+ALATATKKK+  +I+VRV IDR +GD+DT+RR
Sbjct: 3   NKEILLVVEAVSNEKDVQPEVIFGAIEAALATATKKKHGVDIDVRVDIDRDTGDYDTYRR 62

Query: 62  WEIVEE--VTQPTREITLDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQVIVQKVR 119
           W +V +  V  P  E TL AA+ ED    LG+YVE+QIES+ F RI  QTAKQVIVQKVR
Sbjct: 63  WTVVADDAVEDPLTETTLSAAQVEDPEIQLGDYVEEQIESIEFGRIAAQTAKQVIVQKVR 122

Query: 120 EAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENFRPGDRI 179
           EAERA  V+ FR++ GE++TGVVKKV RD I +DLG+NAEAVI RE+M+PRE  R GDR+
Sbjct: 123 EAERAKTVEAFRDKVGELVTGVVKKVTRDYIFIDLGNNAEAVIQREEMMPRETVRAGDRV 182

Query: 180 RGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSRAKIAVK 239
           RG+LY++  E RG QLFV+R++PEML ELFRIEVPEIGEE+IEIK AARDPGSRAK+AVK
Sbjct: 183 RGLLYAISTENRGPQLFVSRTRPEMLEELFRIEVPEIGEEVIEIKGAARDPGSRAKVAVK 242

Query: 240 TNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVD 299
           TNDKRIDPVGACVGMRGARVQAV+ EL GERIDIVL+DDNPAQ+VINAMAPA+V SIVVD
Sbjct: 243 TNDKRIDPVGACVGMRGARVQAVTGELNGERIDIVLYDDNPAQYVINAMAPAEVVSIVVD 302

Query: 300 EDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDMF 359
           ED+ +MDIAV    LAQAIGRNGQN+RLAS+L+GWELNVMT +D   K+Q+E  + + MF
Sbjct: 303 EDSRSMDIAVSEDQLAQAIGRNGQNIRLASELTGWELNVMTEEDFATKNQSETESIVSMF 362

Query: 360 TKHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNALTTLAL 419
              L +DE+ A +LV+EGF++LEE+AYVP +E+LE++G DE+ +EAL+ RAK+ L T A+
Sbjct: 363 VADLGVDEDLADILVQEGFTTLEEVAYVPQSEMLEIEGFDEDLVEALKSRAKDVLLTKAI 422

Query: 420 AKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQAG 479
           A EE L   EPAEDLLN+EG+DR LAF LASKG+ T+EDLAEQ VD+L +I+ L +E+A 
Sbjct: 423 ASEEQLEEAEPAEDLLNMEGMDRHLAFVLASKGIVTMEDLAEQSVDELVEIDELDEERAA 482

Query: 480 ALIMAARNICWF 491
            LIM AR   WF
Sbjct: 483 KLIMTAR-APWF 493