Pairwise Alignments

Query, 495 a.a., transcription termination/antitermination protein NusA from Pantoea sp. MT58

Subject, 577 a.a., transcription termination factor NusA from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  369 bits (947), Expect = e-106
 Identities = 206/477 (43%), Positives = 302/477 (63%), Gaps = 18/477 (3%)

Query: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIEVRVSIDRRSGDFDTFRRWE 63
           E+L + EAV+ EK + RE + EA+E A+    K +Y    ++R  ID ++G+    R   
Sbjct: 12  ELLQIAEAVAREKNIEREIVIEAIEEAIQKGAKSRYGAHHDIRAKIDHKTGELSLTRHVT 71

Query: 64  IVEEVTQPTREIT----------LDAARFEDEAFNLGEYVEDQIESVTFDRITTQTAKQV 113
           IVE+   P  E+            DA++ + EA    EYVE+ +    F R+ TQ A+QV
Sbjct: 72  IVEDDWMPEDELEEFNDSAMVRLKDASKRDPEAVVGKEYVEN-LPPFEFGRVQTQMARQV 130

Query: 114 IVQKVREAERAMVVDQFREQEGEIITGVVKKVNRDNISLDLGSNAEAVILREDMLPRENF 173
           +  KVREAERA   ++F+++ GEI+ G VK+V   N  +DLG   E V+ R+  +PRE F
Sbjct: 131 VTGKVREAERANQYEEFKDRVGEIVNGTVKRVEYGNTIVDLG-RGEGVMRRDQSIPREVF 189

Query: 174 RPGDRIRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEELIEIKAAARDPGSR 233
             GDRIR  +Y VRPEA+G Q+ ++R+ P  + +LF  EVPE+ + +IEI+AAARD GSR
Sbjct: 190 NIGDRIRTYIYDVRPEAKGPQVMLSRAHPGFMAKLFAQEVPEVYDGVIEIRAAARDSGSR 249

Query: 234 AKIAVKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADV 293
           AK+AV +ND  IDPVGACVGMRG+RVQAV +EL GE+IDI+ W+ +   F++NA+APA+V
Sbjct: 250 AKMAVLSNDSSIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWNPDEPTFIVNALAPAEV 309

Query: 294 ASIVVDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAH 353
           + +V+DE+   +++ V    L+ AIGR GQNVRLASQL+GW+++++T      + Q E  
Sbjct: 310 SKVVLDEEAGRVEVVVPDEQLSLAIGRRGQNVRLASQLTGWQIDIITEAQDSERRQREFA 369

Query: 354 AAIDMFTKHLDIDEEFATVLVEEGFSSLEELAYVPINELLEVDGLDEETIEALRERAKNA 413
               +F + LD+DE  A +LV EGF+++E+LAYV   E+ E++G DEET E L+ RA+  
Sbjct: 370 ERTGLFQEALDVDEVIAQLLVTEGFATVEDLAYVDPYEVSEIEGFDEETAEELQARAREY 429

Query: 414 LTTLAL---AKEESLGNQEPAEDLLNLEGLDRALAFRLASKGVCTLEDLAEQGVDDL 467
           L   A    AK   LG +   + +L + G+   +A  L   GV T+EDLA+   D++
Sbjct: 430 LDKKAAELDAKRVELGVE---DGVLQVPGVTLPIAVALGEGGVKTVEDLADLATDEI 483



 Score = 31.6 bits (70), Expect = 8e-05
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 440 LDRALAFRLASKGVCTLEDLAEQGVDDLTDIEGLSDEQAGALIMAAR 486
           +D  +A  L ++G  T+EDLA     ++++IEG  +E A  L   AR
Sbjct: 381 VDEVIAQLLVTEGFATVEDLAYVDPYEVSEIEGFDEETAEELQARAR 427