Pairwise Alignments

Query, 294 a.a., MDR efflux pump AcrAB transcriptional activator RobA from Pantoea sp. MT58

Subject, 288 a.a., helix-turn-helix domain-containing protein from Serratia liquefaciens MT49

 Score =  162 bits (410), Expect = 8e-45
 Identities = 101/287 (35%), Positives = 160/287 (55%), Gaps = 9/287 (3%)

Query: 3   QAGIIRDLLVWLESHLDQPLSLDNVAQKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKA 62
           Q   IR+LLVW+E +L  PLSLD V+ K+GYSKW+LQRMFK  T  ++ +YIRARRL  A
Sbjct: 4   QESHIRELLVWIEDNLTNPLSLDIVSAKSGYSKWYLQRMFKKQTSLSLASYIRARRLYLA 63

Query: 63  AVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTPAWYR--RSSEWNSFGIRPPIRL 120
           A ALR T + ILDI+++Y+FD+QQTF+R FKK FA++P+ YR  R  +++       +  
Sbjct: 64  AFALRYTQKSILDISIEYQFDNQQTFSRCFKKHFAESPSVYRHARKQDFSHLVRSLSVNQ 123

Query: 121 DDETQPEPAFVSLPETVLVGQTQNYTCILEQISSYRDEMRMHFWKQFLLETDTIPPVLYG 180
             + + +   V+  +  + G++  Y   +  +      +R    + F       P + Y 
Sbjct: 124 PGDIKVDRIKVAKGQYAIRGKSYPYHLDITDLDKSHLPIRSKIKETFYALLGERPALTYS 183

Query: 181 LHQVRASQDKDDEQEILYTTAVPADSAVNLHSGQKVILE-GGDYVQFTFNGPRVNLQEFI 239
           L Q     ++     + YT  V AD  V+  +G + + +  GD+ +F + G  V L + I
Sbjct: 184 LAQFVPDGER---VRVDYTLGVAADCPVSDGAGLEALPDISGDFCRFCYAGKPVALNDHI 240

Query: 240 LLLYGTCMPTLGLTRREGQDIERFYTHGGKKRSEPPTEIRCEYLIPI 286
           + +Y   +P LGL RREG D+  F  +   +R E   E+  ++L+P+
Sbjct: 241 VQMYTQVLPQLGLARREGPDLTMF-NYSLNEREELHLEL--QHLVPV 284