Pairwise Alignments

Query, 575 a.a., flagellar M-ring protein FliF from Pantoea sp. MT58

Subject, 273 a.a., type III secretion protein from Pseudomonas simiae WCS417

 Score = 50.8 bits (120), Expect = 7e-11
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 38  VIAIVIAMVLWAKQPSYSVLYNNLTDEDGGAIVTQLTQMNIPYRF--AENGGALMVPEAN 95
           V+ I ++++L A       L+  LT+++   +V +L   +I      A++G  ++V    
Sbjct: 8   VLVICLSLLLQACSERVE-LHRQLTEQEANEVVAELADKHIRATKVPAKDGVIVVVNATE 66

Query: 96  VHELRLRLAQQGLPKGGSVGF-ELLDKEKFGISQFSEQVNYQRALEGELARTIESLGPVK 154
           +      L   GLP+           KE    +   E+  Y  AL  EL  T+ ++  V 
Sbjct: 67  IARAVRTLEAVGLPRAARTTLGNTFRKEGVISTPLEERARYIYALSQELETTLSNIDGVI 126

Query: 155 SARVHLAMPKPTLFVREQKAPSASVTLTLQPGRALDEGQIQA-IAHMVSSSVAGLPPGNV 213
            ARVH+ +P+        +  SASV +   P   LD   I+A +  MV+SS+    PG  
Sbjct: 127 VARVHVVLPERVAPGEPVQPASASVFIKHDP--RLDPDSIRARVRRMVASSL----PGMA 180

Query: 214 TVVDQTGRLLTRSDSAGRDLNDAQLKY 240
           T VD + +L      A   L   +L Y
Sbjct: 181 TAVDNSQKLTVVFVPATAYLEQQRLAY 207