Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Pantoea sp. MT58

Subject, 259 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 74.7 bits (182), Expect = 2e-18
 Identities = 48/234 (20%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 6   SSQLVHWVSQFFWPLVRIMALFATAPILNERSISKRV-KIGLAVMITWLVMPLLPAVNVT 64
           + Q+  W+       +R ++L    P+L   S+   + + G+ + +T+ ++P++    + 
Sbjct: 2   AQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVLMSLTFPILPIIYQQKIM 61

Query: 65  LFSPPGFL---LLIQQMLIGIALGFTMQFAFAAVRLAGEVIGLQMGISFATFFDPGSRLN 121
           +     +    L+  +++IG ++GF     F AV +AG ++    G +  T F+      
Sbjct: 62  MHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLLDTLRGATMGTIFNSTIEAE 121

Query: 122 MPVLARFLDMLAMLLFLSFNGHLWLISLLVDSFHTLPIGGEPINANAFMALVKS-GGLIF 180
             +          ++F    G  +++++L +S+  LP G   +    F+  +++    ++
Sbjct: 122 TSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPGRTLLFDQQFLKYIQAEWRTLY 181

Query: 181 LNGMMLALPLIVLLLMVNLVLGLLNRVSPQLSIFAIGFPITLSVGILTISLLMP 234
              +  +LP I+ +++ +L LGLLNR + QL++F    P+   + +LT+ +  P
Sbjct: 182 QLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISFP 235