Pairwise Alignments

Query, 638 a.a., HAMP domain-containing protein from Pantoea sp. MT58

Subject, 650 a.a., methyl-accepting chemotaxis protein from Pectobacterium carotovorum WPP14

 Score =  408 bits (1049), Expect = e-118
 Identities = 262/614 (42%), Positives = 374/614 (60%), Gaps = 19/614 (3%)

Query: 6   KVSKLNIGRKLTLGFLLVILASLAISVLAALCFLKIQDNSEKRDVTVQMVDALAKARLNR 65
           ++    I  KL  GF +++L  +  S L+   F  I+D  EK ++   +   + +A++NR
Sbjct: 7   RIRNTKIAHKLYAGFGIILLLVIVASSLSTKRFKDIKDIYEKTNLIYSINIEVFQAKINR 66

Query: 66  TLFQYTRDTKFIELNGEAMNQLSALYKNLEKYSWSTGGREKLSALNTALAQYQEKRQHFL 125
             + Y  D K  ++  + +   + L  + +  +WST     +++L   L  +Q       
Sbjct: 67  VKYFYAPDEKTKDILAKFVKSATDLTDSAKTLAWSTDELGHINSLKENLEGFQTSVSAMS 126

Query: 126 ASNHSAAL---SLNDIQALG-LTSVAEKLAARQAYVPADLTAPLLALSLKTEQAAFYVQA 181
            +   A      +N + A   L  VA+ +    ++   D    +  L+    +       
Sbjct: 127 VATQKAVEIQGKMNQLHAQATLEPVAQTIHNTSSFPDNDAYYAMSKLAFLLSEVQKLSYE 186

Query: 182 FMHGPDASTL----NKFNEIKDGFSPLV---SQLSGLADTSLGALLADVAQKTTSGTTLL 234
                D  T+    N++ E +  +  L    S L G AD +L   +    Q      T  
Sbjct: 187 LQITKDEKTIAALNNRYAETESAYKALPILPSDLKGQAD-ALRNYIKQYQQINADYYTAF 245

Query: 235 NNYLQSVQVEKRASDEMTAAAGKLNQSITDLAFFQSEQAQKYMHTALWQIGFATLVCITL 294
           ++  ++  +  RA    T ++  +N ++T +   ++++      T    IG   L+ + +
Sbjct: 246 DDVKKAEYLVMRAG---TKSSADIN-ALTAIIKAKNDELAYNSATITMIIG---LIAVII 298

Query: 295 SLLIAWRMTRSITVPLRETLSSAQRIAEGDLTAEITSSRTDELGELMTAMGAMNQSLRNI 354
            ++I+  +TR IT P+   L+ A+RIA GDLT  I + R DELG L  AMG MN+ LR++
Sbjct: 299 GIIISIYITRIITRPIIHNLALAERIASGDLTTTIQTDRHDELGRLTHAMGTMNEQLRHV 358

Query: 355 ISRVRDGVNNVARASSEIAAGNTDLSSRTEQQSAAVVETAASMEELTSTVKLNAENAHHA 414
           IS VRD V +V++++S+IA GN+DLSSRTEQQSAAVVETAASMEELTSTVK NA+NA HA
Sbjct: 359 ISEVRDSVGSVSQSASKIATGNSDLSSRTEQQSAAVVETAASMEELTSTVKNNADNAKHA 418

Query: 415 SQLATDASHNASCGGEIISEVITTMGGISQSSGKIGEIITVINGIAFQTNILALNAAVEA 474
           SQ+A DAS NA  GGE++ +V+TTM  I+ SS KI +I TVIN IAFQTNILALNAAVEA
Sbjct: 419 SQIAADASKNALKGGEVVKQVVTTMDNIAASSKKIADITTVINSIAFQTNILALNAAVEA 478

Query: 475 ARAGEQGRGFAVVAGEVRNLAQRSSLAAKEIEVLIRESLDRVSNGTELVNRAGVTMEGIV 534
           ARAGEQGRGFAVVAGEVR+L+QRSS AAK+IE LI ES++R + G+ LV  AG TME IV
Sbjct: 479 ARAGEQGRGFAVVAGEVRSLSQRSSQAAKDIEALISESVERTNAGSHLVAVAGETMEQIV 538

Query: 535 RSVTQVRDIMGEIAAASDEQNRGITQIAQAMTEMDSTTQQNAALVEESSAAASSLEEQAL 594
            SV++V DIMGEI++AS+EQ+RGI QIAQA++E+D+TTQQNA+LV ESS +A+SLEEQA+
Sbjct: 539 DSVSRVNDIMGEISSASEEQSRGIGQIAQAISELDTTTQQNASLVMESSISANSLEEQAV 598

Query: 595 ELEKTVSVFRVPSS 608
            LEK +  FR+  S
Sbjct: 599 LLEKLLEHFRMSQS 612



 Score = 30.4 bits (67), Expect = 3e-04
 Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 159 ADLTAPLLALSLKTEQAAFYVQAFMHGPDASTLNKFNEIKDGFSPLVSQLSGLADTSLGA 218
           AD+T  + +++ +T   A  + A +    A    +   +  G    +SQ S  A   + A
Sbjct: 454 ADITTVINSIAFQTNILA--LNAAVEAARAGEQGRGFAVVAGEVRSLSQRSSQAAKDIEA 511

Query: 219 LLADVAQKTTSGTTLL----NNYLQSVQVEKR----------ASDEMTAAAGKLNQSITD 264
           L+++  ++T +G+ L+        Q V    R          AS+E +   G++ Q+I++
Sbjct: 512 LISESVERTNAGSHLVAVAGETMEQIVDSVSRVNDIMGEISSASEEQSRGIGQIAQAISE 571

Query: 265 LAFFQSEQAQKYMHTALWQIGFATLVCITLSLLIAWRMTRSITVPLRETLSSAQRIA 321
           L     + A   M +++          +   LL  +RM++S         SSA R A
Sbjct: 572 LDTTTQQNASLVMESSISANSLEEQAVLLEKLLEHFRMSQSDNRTGSRASSSASRHA 628