Pairwise Alignments

Query, 672 a.a., NAD-dependent DNA ligase LigA from Pantoea sp. MT58

Subject, 785 a.a., NAD-dependent DNA ligase LigA from Pseudomonas simiae WCS417

 Score =  633 bits (1633), Expect = 0.0
 Identities = 347/679 (51%), Positives = 446/679 (65%), Gaps = 38/679 (5%)

Query: 1   MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQ 60
           M +    I ELR  L  H Y YHV+D P +PDAEYDRL  EL+ LE EHPDL+T DSPTQ
Sbjct: 1   MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ 60

Query: 61  RVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLK--------NSEDITYCC 112
           RVG+A L+ F QV+HE+PMLSL NAFDE T + F++RV + L             + Y C
Sbjct: 61  RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAAVEYSC 120

Query: 113 ELKLDGAAVSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRG 172
           E KLDG AVSL+Y++G LV+ ATRGDGTTGE+I+ NVRT+R IPL+L G   PA LEVRG
Sbjct: 121 EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPANLEVRG 180

Query: 173 EVFMTQRGFEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEG 232
           EVFM++ GFE+LN       GK FANPRNAAAGSLRQLD +ITA RPL F CYG      
Sbjct: 181 EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTT--- 237

Query: 233 GEMPHSHMARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVD 292
            ++  +H+  LQQ + WG+P+S  +K     ++ L +YR+I ++R +L ++IDGVV KV+
Sbjct: 238 -DISDTHIGNLQQLQKWGMPISRELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVFKVN 296

Query: 293 SQALQEQLGFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVI 352
           S A Q +LGF AR PRWAIA KFPA E+LT + DVEFQVGRTGA+TPVARL+PV+VAGV 
Sbjct: 297 SIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVT 356

Query: 353 VSNATLHNADEIERLGLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPVCG 412
           VSNATLHN DE+ RLG+ IGD V+IRRAGDVIPQVV+VV+  RPE  R V  P  CPVCG
Sbjct: 357 VSNATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVPIPQSCPVCG 416

Query: 413 SEVER------------VEGESVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIID 460
           S VER            V   +V RC G L CGAQ K+A+ HFVSRRA+D+DG+GDK I+
Sbjct: 417 SHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIE 476

Query: 461 QLVEKEYVSTPADLFRLTAGKLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYALGIREV 520
           QLV+++ + +PADL++L    +  L+     S++ ++ A+E +KS TLARF+YALGI +V
Sbjct: 477 QLVDEKLIGSPADLYKLKYEHIIDLEGFADISSKKLITAIENSKSPTLARFIYALGIPDV 536

Query: 521 GEATAANLANHFGELQKVMDADLEALIAVPDVGKVVATHVRNFMEEESNREVIRQL--TE 578
           GE TA  LA     L++V  A  E L  +PDVG  VA  + +F E+  N++VI  L   E
Sbjct: 537 GEETAKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPE 596

Query: 579 EIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMN----RDDAKAQLVALGAKVSGSVS 634
           E G+      +    ++ + FA  T  L G L +++       A  +L      + G + 
Sbjct: 597 ECGLQ-----LQDQGDLSAEFAAST-TLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVI- 649

Query: 635 KKTDLLIAGEAAGSKLAKA 653
            K D L   +A   K AKA
Sbjct: 650 -KADWLDMRQALPEKQAKA 667



 Score =  107 bits (267), Expect = 2e-27
 Identities = 75/174 (43%), Positives = 96/174 (55%), Gaps = 10/174 (5%)

Query: 501 EKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDAD-LEALIAVPDVGKVVATH 559
           E A STTL   L  L +  VG   A  LA+ F  L+ V+ AD L+   A+P+     A  
Sbjct: 611 EFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQALPEKQ---AKA 667

Query: 560 VRNFMEEESNRE---VIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVLTGSLSQMNRD 616
           VR F +   N      I Q  ++ G+HW     V       P AG T VLTGSL  M+RD
Sbjct: 668 VREFFDNADNAHRALAIEQQLKDFGMHWDSEKKVVE---GLPEAGHTWVLTGSLELMSRD 724

Query: 617 DAKAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEMIRLL 670
            AK +L +LGAKV+GSVS KT  ++AG  AGSKL KA ELG++V+DE   +  L
Sbjct: 725 VAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKASELGLKVLDEEAFVAFL 778