Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Pantoea sp. MT58

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  409 bits (1050), Expect = e-119
 Identities = 210/277 (75%), Positives = 236/277 (85%)

Query: 53  RVLDATQLYLGEIGYSPLLTAEEEVFFARRALRGDIPSRRRMIESNLRLVVKIARRYSNR 112
           R LDATQLYL EIG+SPLL+ EEEV FAR + +GD   R+RMIESNLRLVVKIARRY NR
Sbjct: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNR 118

Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172
           GL+LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+V
Sbjct: 119 GLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVV 178

Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232
           KELNVYLR AREL+ KLDHEPS EEIA  L+KPV +V RML LNER++SVD  LG DS+K
Sbjct: 179 KELNVYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGPDSDK 238

Query: 233 ALLDILADEKDNGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292
            LLD L D++   P +  QDDD+ QSI +WL EL  KQREV+ RRFGL G+E++TLEDVG
Sbjct: 239 TLLDTLTDDRPTDPCELLQDDDLSQSIDQWLGELTDKQREVVVRRFGLRGHESSTLEDVG 298

Query: 293 REIGLTRERVRQIQVEGLRRLREILQAQGLSIEALFR 329
            EIGLTRERVRQIQVEGL+RLREIL+  GLS E+LF+
Sbjct: 299 LEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ 335