Pairwise Alignments

Query, 289 a.a., helix-turn-helix domain-containing protein from Pantoea sp. MT58

Subject, 289 a.a., MDR efflux pump AcrAB transcriptional activator RobA from Escherichia coli ECOR27

 Score =  139 bits (349), Expect = 1e-37
 Identities = 86/260 (33%), Positives = 128/260 (49%), Gaps = 6/260 (2%)

Query: 11  INDLVEWIEAHLTDDINIDQITLKSGYSKWHMQRMFKEMTGQTLAAYTRKRRLTMAAMAL 70
           I DL+ W+E HL   +++D +  K+GYSKWH+QRMFK++TG  + AY R RRL+ +A+AL
Sbjct: 7   IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVAL 66

Query: 71  RLTRMTLIDIAVRFGFDNQQNFTRVFKGHFALTPGAFRRIPHLPVKNFHGRILVRSLAER 130
           RLT   ++DIA+++ FD+QQ FTR FK  FA TP  +RR P          + +      
Sbjct: 67  RLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMP 126

Query: 131 ATLVEREEELHLRGETQEWECKFGDYFADRDHQVADQARQLVALAGSHVAQGWLGF-QYG 189
                  E+  L G TQ + C   +  +D  H++  Q           +     G  +  
Sbjct: 127 EHKFVTLEDTPLIGVTQSYSCSL-EQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185

Query: 190 PGQSSADQQNISLFQALEPQYAD--LLSDHTSSWSEAAGLYASIRWSGRPEQLTRFIEDI 247
           P Q   D+Q +    AL    AD  +L+ H        G Y    + G    +  FI  +
Sbjct: 186 PSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ--GGEYVMFTYEGLGTGVQEFILTV 243

Query: 248 YYQHLPALGVARRPGKDLLR 267
           Y   +P L + RR G+D+ R
Sbjct: 244 YGTCMPMLNLTRRKGQDIER 263