Pairwise Alignments

Query, 829 a.a., ribonuclease R from Pantoea sp. MT58

Subject, 812 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1300 bits (3364), Expect = 0.0
 Identities = 651/827 (78%), Positives = 719/827 (86%), Gaps = 21/827 (2%)

Query: 1   MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLQEEEHLEALRRRLR 60
           MS+DPFQ+REAEKY NPIPSREFIL  L KREKPASREELA E+N++ EE LEALRRRLR
Sbjct: 1   MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLR 60

Query: 61  AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH 120
           AMERDGQLVFTRRQCYALPERLDLL+G VIGHRDGYGFLR EG+KDDLYLS+EQMK C+H
Sbjct: 61  AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH 120

Query: 121 GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP 180
           GD +LAQPLGADRKGRREAR+VRV  P+ +QIVGRYFTDAG GFVVPDDSRLSFDILIPP
Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP 180

Query: 181 EETMNARMGSVVVVELVQRPNRRSKAIGKIAEILGDDMGTSLAVDMALRTHEIPHTWPPE 240
           E+ M ARMG VVVVEL QRP RR+KA+GKI E+LGD+MGT +AVDMALRTHEIP+ WP  
Sbjct: 181 EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA 240

Query: 241 VEAQISKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300
           VE Q++ LKEEVPEEAK GRVDLR LPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
Sbjct: 241 VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 301 DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 360
           DVSYYVRP TPLD EA  RGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 360

Query: 361 TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELNNLYHALEAA 420
            KG+LTG+K YEAVM+SHARLTY KVW++LQGD++LR+QYAPLVK +EEL+NLY  L+ A
Sbjct: 361 AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA 420

Query: 421 REERGGISFETEEAKFIFNAERRIERVERASRNDAHKLIEECMILANIASARFVEKNQEP 480
           REERGGISFE+EEAKFIFNAERRIER+E+  RNDAHKLIEECMI+ANI++ARFVEK +EP
Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP 480

Query: 481 ALFRDHDRPTDESIKSFRTVLNELGLTLPGGNKPQPVDYAALLKQVADRPDAEMLQTMLL 540
           ALFR HD+PT E+I SFR+VL ELGL LPGGNKP+P DYA LL+ +ADRPDAEMLQTMLL
Sbjct: 481 ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL 540

Query: 541 RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGEGKGLVQRA 600
           RSMKQA+YDPENRGHFGLAL SYAHFTSPIRRYPDL+LHRAIKYLLAKEQG         
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGN-------- 592

Query: 601 IKYLMPKDKNAKDLTTATGGYHYDMPEMLQLGLHCSLTERRADEATRDVADWLKCDFMQD 660
                      K  TT TGGYHY M EMLQLG HCS+ ERRADEATRDV+DWLKCDFM D
Sbjct: 593 -----------KGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLD 641

Query: 661 QVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTYR 720
           QVGNVF GVI+SVTGFGFFVRL +LFIDGLVHVS+LDNDYYRFD VGQRLIGESGG+TYR
Sbjct: 642 QVGNVFKGVIASVTGFGFFVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYR 701

Query: 721 LGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKRDDNAPTKRRRNASRKSN 780
           LGD VEVRVEAV+MDERKIDF+LISS+R  R  GKTAR++AK+ ++    +RR   +K N
Sbjct: 702 LGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGKKVN 761

Query: 781 FEPDSAFRGD-KGKP-AAADSANKSKNVSEKTRKIAAATRAKRARKK 825
           FEPDSAFRG+ K KP AA   A K+K  S KT+KIAAAT+AKRA KK
Sbjct: 762 FEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 808