Pairwise Alignments

Query, 327 a.a., ribose operon transcriptional repressor RbsR from Pantoea sp. MT58

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  226 bits (575), Expect = 8e-64
 Identities = 125/329 (37%), Positives = 200/329 (60%), Gaps = 7/329 (2%)

Query: 1   MKDVARLAGVSTSTVSHVINNNRFVSDGVREKVEQAIRHLNYAPSALARSLKINQTHTIG 60
           +KDVA LAG+S +TVSHV+N  R VS+ VR KVE AI  L+Y PSA+ARSLK   T TIG
Sbjct: 4   IKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTATIG 63

Query: 61  MLLTTSSNPFYAEVVRGVEESCYQRGYSLILCNTAGDEERMNRSLETLMQKRVDGLLMMC 120
           +L+  S NP++AE+ RG+E++C + GY +ILCN+  + ++    L  L++KR+DGL++  
Sbjct: 64  LLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVVAS 123

Query: 121 TESHLPSADILNRYPSI--PTVMMDWAPFEGRGDIIQDNALLGGELATQHLIDCGYTRIA 178
                   D+L    S+  P V++D        D+++ +   G  LAT+HL++ G+  +A
Sbjct: 124 VGQ---DDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180

Query: 179 CIAGPQDKTPARMRLEGYRNAMTKSGLEILPGYVVNGDFEFQGGYNGMVELLALETPPEA 238
            I GP +    ++RL G+R AM ++G  +    V++ DF   GG+    ++L  +  P A
Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGKR-PSA 239

Query: 239 VFTSNDAMAVGVYHALYQAGMRIPQQMAVMGYDDIELARYLTPPLSTIHQPKDALGELAI 298
           +F  ND +  GV  A  +  + +P +++V+G+DDIEL+RY+ P L+T+ Q    LGE A 
Sbjct: 240 IFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESAA 299

Query: 299 DTLIHRLSDP-DASQQTLVLTPELVVRGS 326
             L+ R++ P   + +  ++ P +V+R S
Sbjct: 300 SLLLTRIATPRQGAAEQRIVAPRIVLRES 328