Pairwise Alignments

Query, 299 a.a., HTH-type transcriptional activator IlvY from Serratia liquefaciens MT49

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 14/259 (5%)

Query: 3   LRDLKLFLHLAESHHFGRTAKAMHVSPSTLSRQIQRLEEILGQPLFLRDNRTVQLTDAGE 62
           ++ L+ FL L E+ +F R A+   ++  TLS+ IQRLEE LG+ L +R+N+ V+LT AG+
Sbjct: 5   IKTLQCFLTLVETENFTRAAQKCFITQPTLSKIIQRLEESLGETLLIRNNQKVELTQAGQ 64

Query: 63  QLKDFAQQTLLQYQQLKHSLGQHGPSLSGELRL-FCSVTAAYSHLPPILDRFRAQHPLVE 121
             +  A++ L Q+ +L+  +       SG LRL  C + +  S +  +L  +R ++P VE
Sbjct: 65  LFEHSAREILGQWHRLQEDMSNLSGLKSGRLRLGVCPMMS--SLIIGLLTSYRKRYPGVE 122

Query: 122 IKLTTGDAADAVDKVQSNEADLGIAGRPETLPTSVAFTKIGEIPLVLIAP-ALPCAVRSQ 180
           +++           + +N  D+     P T  T +    + + PL+   P A P A +S 
Sbjct: 123 LQMYEYGGFGCEQALLNNSLDIAFTALPTTHETELINQPLTKYPLLACLPEAHPLAAKS- 181

Query: 181 AFAEQPDWANIPFILPEHGPSRKRIELWFRRQRIANPLIYATVGGHEAIVSMVALGCGIA 240
            +    D+   PFIL     S  ++     R+      I    G  + + +MV    G+A
Sbjct: 182 -YLSWQDFEPYPFILYNEDFSLAKLINRLSRKAGVQLNIAFRSGQWDFLATMVEADMGLA 240

Query: 241 LIPGVVVDNSPEPVRNRIS 259
           ++        PEP+  ++S
Sbjct: 241 IL--------PEPICQKLS 251