Pairwise Alignments

Query, 849 a.a., nitrite reductase large subunit from Serratia liquefaciens MT49

Subject, 1391 a.a., nitrite reductase small subunit NirD from Rahnella sp. WP5

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 494/842 (58%), Positives = 630/842 (74%), Gaps = 2/842 (0%)

Query: 1    MSRVKLAVIGNGMVGHRFIEDLLEKADKDQFDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
            MS+  L + G+GMVGH F++ L+E+    Q+ + VF EE   AYDRVHLS +FS  +AE 
Sbjct: 418  MSKPVLVMAGHGMVGHHFLQQLVERELHRQYQVIVFAEEKSPAYDRVHLSEFFSGRSAES 477

Query: 61   LSLVREGFYEKQGVKVLVGERAITINRSEKVIHSNTGRTVYYDKLIMATGSYPWIPPIKG 120
            LS+V EGF+   G+++ +G     I+   + +  + GR   YD L++ATGSYP++PPI G
Sbjct: 478  LSVVEEGFFASTGIELRLGHSIGHIDTRHRFVVDHQGRQTAYDLLVLATGSYPFVPPIPG 537

Query: 121  SDSQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKSLGVETHVIEFAPVL 180
            +D+  C VYRT++DL AI+ACA   K G VVGGGLLGLEAA ALK LG++THV+EFAP L
Sbjct: 538  NDAPGCLVYRTLDDLAAIQACAATGKTGVVVGGGLLGLEAANALKHLGLQTHVVEFAPRL 597

Query: 181  MAEQLDPMGGDQLRRKIERMGVKVHTGKNTQEIVNGGEQARKTMQFADGTALEVDFIVFS 240
            M  QLD  G   LRRKIE + V+VHTGK T+ IV  GE +R  M+FADG  LE D ++FS
Sbjct: 598  MGVQLDEGGAAMLRRKIEALDVQVHTGKETRAIV-AGEASRYRMEFADGGHLETDLVLFS 656

Query: 241  TGIRAQDKLAHQCGLATARRGGIVINDSCQTSDPDVYAIGECASWRDRTFGLVAPGYKMA 300
             GIR +D+LA +CGL    RGGIVIND C+TSDP ++AIGECA W  + FGLVAPGY+MA
Sbjct: 657  AGIRPRDQLAKECGLEVGPRGGIVINDQCRTSDPAIFAIGECALWNGQIFGLVAPGYQMA 716

Query: 301  QVTADHLLGRENTFLGADMSAKLKLLGVDVGGIGDAHGRTEGARSYVYLDESKEIYKRIV 360
            +  AD L G E  F GADMS KLKLLGV+V  +GDAHGRT G++SY ++D   E+YK+IV
Sbjct: 717  RTLADTLSGSEVAFKGADMSTKLKLLGVEVASVGDAHGRTPGSQSYSWVDGPAEVYKKIV 776

Query: 361  VSADNKTLLGAVLVGDTSDYGNLLQLALNAIELPENPDGLILPSHAGSKP-AIGVESLPE 419
            VS D K LLGAVLVGD+++Y  LLQ+ LN + LP +P+ LILP+ AG+ P  +GV +LP+
Sbjct: 777  VSQDGKRLLGAVLVGDSNEYSTLLQMMLNDMPLPASPENLILPASAGAAPQTLGVAALPD 836

Query: 420  NAQICSCFDVSKGDIIKAVSMGCHTVAAIKSETKAGTGCGGCIPLITQVLNAELTKQGIE 479
             AQICSC +VSK DI  AV  GC  +AA+K+ TKA TGCGGC  L  QV+   LT+ G+E
Sbjct: 837  GAQICSCHNVSKSDICDAVKGGCGDMAAVKACTKAATGCGGCAALTKQVMEFALTEMGVE 896

Query: 480  VNHHLCEHFAYSRQELYHLIRVEGIKSFDELLAKYGKGYGCEVCKPTVGSLLASCWNEYV 539
            V   +CEHFAYSRQE+YHL+R+  I+SF EL+ K+G G GCE+CKP  GS+LASCWN+Y+
Sbjct: 897  VKKDVCEHFAYSRQEIYHLVRMGNIRSFAELIQKHGHGSGCEICKPLAGSILASCWNDYL 956

Query: 540  LKPQHTPLQDTNDNFLGNIQKDGTYSVIPRSAGGEITPDGLMAVGQIAKEYNLYTKMTGS 599
            LKPQH PLQDTND +  NIQKDGTYSV+PR   GEITPDGL+A+G +AK YNLYTK+TG 
Sbjct: 957  LKPQHLPLQDTNDRYFANIQKDGTYSVVPRIPAGEITPDGLIAIGLVAKRYNLYTKITGG 1016

Query: 600  QRIGMFGAQKDDLPAIWSKLIAAGFETGHAYAKALRMSKTCVGSTWCRYGVGDSVGFGVK 659
            QR+ +FGA+ + LP IW +L+ AGFETGHAY K+LR  K+CVGS+WCRYGV DS G  ++
Sbjct: 1017 QRVDLFGARLEQLPEIWQQLVDAGFETGHAYGKSLRTVKSCVGSSWCRYGVQDSTGLALQ 1076

Query: 660  LEHRYKGIRTPHKMKFGVSGCTRECAEAQGKDVGIIATENGWNLYVCGNGGMKPRHADLL 719
            LE+RYKG+R+PHK+K  VSGCTRECAEAQ KDVG+IATE GWNLYVCGNGGMKPRHADLL
Sbjct: 1077 LENRYKGLRSPHKIKMAVSGCTRECAEAQSKDVGVIATEKGWNLYVCGNGGMKPRHADLL 1136

Query: 720  AADLDSETLEHYLDRFMMFYIRTADKLQRTSVWLESLEGGIDYLRKVIIDDKLGINAQLE 779
            A D+ +E L   +DRF+MFYIRTAD+LQRTS W+++LEGG+DYLR+V+++D L I A+LE
Sbjct: 1137 AQDMSTEDLIRTVDRFLMFYIRTADRLQRTSTWMDNLEGGMDYLRQVVLEDSLHIGAELE 1196

Query: 780  AEIARLRDAVICEWKETVEHPESQVRFAHFINSSQRDPNVQVVAEREQHRPARPDERIPV 839
            +E+  +     CEW+ T+  P+    F  F+NSS+ D  V +V ER+Q RPA   ER  +
Sbjct: 1197 SEMNAVVGTYQCEWQTTLADPDRLALFRPFVNSSEPDEAVVMVTERQQVRPATSQERAGI 1256

Query: 840  TL 841
            ++
Sbjct: 1257 SV 1258



 Score =  162 bits (409), Expect = 2e-43
 Identities = 132/441 (29%), Positives = 219/441 (49%), Gaps = 19/441 (4%)

Query: 1   MSRVKLAVIGNGMVGHRFIEDLLEKADKDQFDITVFCEEPRIAYDRVHLSSYFSHHTAEE 60
           M +  L VIGNGM G R +E L E+A  +++ I +  EE + AY+R+ L+   +     +
Sbjct: 1   MDKPTLIVIGNGMAGVRLVERLCERAP-ERYRIVIIGEEKQPAYNRILLTPVLAGEKQFD 59

Query: 61  LSLVREG-FYEKQGVKVLVGERAITINRSEKVIHSNTGRTVYYDKLIMATGSYPWIPPIK 119
             +  +  +Y++  V  + G  A  I+R+ + + +  G+   Y  L++ATGS P++    
Sbjct: 60  DIVTHDAQWYKRHNVTFIAGAAATEIDRTARRVRAG-GQMFDYHHLVLATGSRPFMLAAP 118

Query: 120 GSDSQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKSLGVETHVIEFAPV 179
           G+  +    +R  +D+  I +     +   VVGGG+LG+EAA AL   G++  ++     
Sbjct: 119 GAQLRGIHGFRQQQDVENILSGDYAGQPVVVVGGGVLGVEAAAALALRGMQVSLLHRGNH 178

Query: 180 LMAEQLDPMGGDQLRRKIERMGVKVHTGKNTQEIVNGGEQAR--KTMQFADGTALEVDFI 237
           LM  QLD    + LR  +   G+   T    Q +   G+ A   + ++ +DG  +    +
Sbjct: 179 LMDSQLDEHSAELLRASLATRGIT--TLLQAQTVAYAGDPAGNVRAVRLSDGREIPAQRV 236

Query: 238 VFSTGIRAQDKLAHQCGLATARRGGIVINDSCQTSDPDVYAIGECASWRDRTFGLVAPGY 297
           V + G+R +  LA   GL   R  GI+++ + QTSDP + AIGEC    + T GLVAP +
Sbjct: 237 VVAAGVRPEIALAQAAGLDCDR--GILVSVTLQTSDPAISAIGECCQQGELTAGLVAPCW 294

Query: 298 KMAQVTADHLLGRENTF-LGADMSAKLKLLGVDVGGIGDAHGRTEGARSYVYLDESKEIY 356
           + A+  A  L G      +   +  +LK+ G+DV   G+ HG  +GA+ +   D     Y
Sbjct: 295 QQAEALAARLAGAPVVSPVMHTVPLRLKVTGIDVFCAGELHG-GDGAQIHTVSDPVDGHY 353

Query: 357 KRIVVSADNKTLLGAVLVGDTSDYGNLLQLALNAIELPENPDGLILPSHAGSKPAIGVES 416
           +R+++  DN+ L G +L GD SD           I  P N    +     G +PAI  E 
Sbjct: 354 RRLLL-RDNR-LTGVLLWGDISDGPEYFA----RISHPANCQTPLSIFSPGDEPAIKSEQ 407

Query: 417 LPENAQICSCFDVSKGDIIKA 437
           LP  A++     +SK  ++ A
Sbjct: 408 LP--AEVTRSTAMSKPVLVMA 426