Pairwise Alignments

Query, 328 a.a., calcium/sodium antiporter from Serratia liquefaciens MT49

Subject, 316 a.a., sodium/calcium exchanger (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (591), Expect = 1e-65
 Identities = 140/316 (44%), Positives = 206/316 (65%), Gaps = 12/316 (3%)

Query: 3   LAIALLIVGLFL-LVYGADRLVYGAAVISRSLGVPPLIIGMTIVGIGTSLPELFVSTTAA 61
           + IAL I+G FL L  GA+ LV GA  I+  LG+ PL+IG+TIV  GTS PEL VS  AA
Sbjct: 1   MLIALSIIGGFLILTLGAEALVRGATTIALRLGITPLVIGLTIVAFGTSAPELAVSVKAA 60

Query: 62  LNGQIDMAVGNVLGSNITNILLILGVAALIHPLAARSEVLRRELPLMLAVTVLCGFVLMD 121
           L G   +A+GNV+GSNI NI LILG+ ALI P+  +SE+++R++P+M+  ++L   +L+D
Sbjct: 61  LAGNSGIALGNVIGSNIVNIGLILGITALIRPIEVKSEMVKRDIPIMILASMLFWGLLLD 120

Query: 122 GTLSRLDGVLLLAAAAVFILLMLKIARLAQREGSDSLTVEQIAELPQDSSNTVAILWLVL 181
           G LS +DGV+LL+    F+L  L  +  + +  +D+   E I E P++    +++L++ +
Sbjct: 121 GELSLIDGVILLS----FMLGYLVFSYFSAKNTNDA-DGEVIEEGPKNP--LLSLLFIAV 173

Query: 182 AFIILPLSSKMVVDNATVIAHYFGMSELVVGLTVIAIGTSLPELATSIAGALKGEDDMAI 241
              +L     + V+ A  +A  FG+SE+++GLT++AIGTS+PEL TS+  ALKG+ D+AI
Sbjct: 174 GISMLVGGGILFVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAALKGQSDIAI 233

Query: 242 GNIIGSNIFNTVIVLGVPALLSPGTVDGAAFHR-DYWVMLAVSIVLSALCIGRKHRIGHL 300
           GNI+GSNIFN + +LGV A++ P  V G  F   D+ VMLA ++V+         RIG  
Sbjct: 234 GNIVGSNIFNILGILGVTAIVYP--VSGLGFQSLDFIVMLAFAVVILPFA-WTGLRIGRR 290

Query: 301 AGALLLCGFIAYLAVL 316
            GA LL  ++ YL  L
Sbjct: 291 EGATLLIAYLGYLIYL 306