Pairwise Alignments

Query, 495 a.a., ribosome biogenesis GTPase Der from Serratia liquefaciens MT49

Subject, 437 a.a., putative phosphoglycerate dehydrogenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  293 bits (750), Expect = 8e-84
 Identities = 172/467 (36%), Positives = 263/467 (56%), Gaps = 40/467 (8%)

Query: 4   VVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGG-IDG 62
           +VA+VGRPNVGKSTLFNRLT TR A+V +  G TRDR+YG++E  G EF +VDTGG +  
Sbjct: 4   LVAIVGRPNVGKSTLFNRLTKTRQAIVNEEAGTTRDRQYGKSEWLGREFSVVDTGGWVVN 63

Query: 63  TEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVANKTDG 122
           ++D  E  +  Q LLA+EEAD++LF+VD   G+   D  +A  LR       +VANKTD 
Sbjct: 64  SDDIFEEEIRKQVLLAVEEADVILFVVDVMNGVTDLDMQVATILRRANSPVIMVANKTDN 123

Query: 123 MDPDMATADFYSLGLGDVHAIAASHGRGVAQLIEHVLVPFVGEKPEEVELTEEEANAAYW 182
            +      +FY LGLGD + I+A  G G   L++ ++  F  E  E ++           
Sbjct: 124 NELQYNAPEFYKLGLGDPYCISAITGSGTGDLMDLIVSKFNKETSEILD----------- 172

Query: 183 AEQEGELPEDEEEEPEDDFNPQDLPIKLAIVGRPNVGKSTLTNRILGEERVVVYDMPGTT 242
                                 D+P + A+VGRPN GKS++ N  +GE+R +V ++ GTT
Sbjct: 173 ---------------------DDIP-RFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTT 210

Query: 243 RDSIYIPMVRDEREYVLIDTAGVRKRGKVTETVEKFSVIKTLQAIEDANVVLLVVDAREG 302
           RDSIY    +   ++ L+DTAG+RK+ KV E +E +SV++++++IE+A+V +L++DA  G
Sbjct: 211 RDSIYTRYNKFGFDFYLVDTAGIRKKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRG 270

Query: 303 ISDQDLSLLGFILNSGRSLVIAVNKWDGMSEEDREHVKEM---LDLRLG-FVDFARVHFI 358
           +  QDL++L  I  + + LV+ +NKWD + ++  + +KE    +  R   FVDF  + F 
Sbjct: 271 VESQDLNILSLIQKNQKGLVVVINKWDLIEDKTAKMMKEFEATIRSRFAPFVDFP-IIFA 329

Query: 359 SALHGSGVGNLFESVQEAYECATRRVNTSMLTKIMQMAADDHQPPLVRGRRVKLKY-AHA 417
           SAL    +  + E  +  YE  T ++ T+ L + M    + + PP  +G+ +K+KY    
Sbjct: 330 SALTKQRILKVLEEARNVYENRTTKIPTARLNEEMLPLIEAYPPPSNKGKYIKIKYITQL 389

Query: 418 GGYNPPIVVIHGNQVTDLADSYKRYLMNYFRRSLKVMGTPIRIQFKE 464
                P  V   N    + + YKR+L N  R    + GTPI I  ++
Sbjct: 390 PNTQVPSFVYFANLPQYVKEPYKRFLENKMREKWNLTGTPINIYIRQ 436



 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 2   IPVVALVGRPNVGKSTLFNRLTHTRDALVADFPGLTRDRKYGRAEVEGNEFIIVDTGGI- 60
           IP  A+VGRPN GKS++ N        +V +  G TRD  Y R    G +F +VDT GI 
Sbjct: 175 IPRFAVVGRPNAGKSSIVNAFIGEDRNIVTEIAGTTRDSIYTRYNKFGFDFYLVDTAGIR 234

Query: 61  --DGTEDGVETRMAGQSLLAIEEADIVLFMVDARAGLMPADQGIAQHLRNRQKATFLVAN 118
             +   + +E     +S+ +IE AD+ + M+DA  G+   D  I   ++  QK   +V N
Sbjct: 235 KKNKVNEDLEYYSVVRSIRSIENADVCILMLDATRGVESQDLNILSLIQKNQKGLVVVIN 294

Query: 119 KTD 121
           K D
Sbjct: 295 KWD 297