Pairwise Alignments

Query, 397 a.a., efflux RND transporter periplasmic adaptor subunit from Serratia liquefaciens MT49

Subject, 466 a.a., RND family efflux transporter, MFP subunit from Sphingomonas koreensis DSMZ 15582

 Score =  158 bits (399), Expect = 4e-43
 Identities = 106/336 (31%), Positives = 174/336 (51%), Gaps = 9/336 (2%)

Query: 2   PSFQRLKRYLPPTVIVAAIALFLYFRSHDATETPRYITAVAQTRDLEQTVLADGTIEAQK 61
           P +QR  +++   ++V A+A  L+ R   ++E   Y T   +   L  TV A G +    
Sbjct: 19  PVWQRYAKWIALVLVVIAVAFGLW-RYFASSEQAGYATQKVERGALTVTVSATGKLAPTN 77

Query: 62  QVSVGAQVSGQIKALYVALGDKVHKGQRVAEIDDLTQQNALRDAEAALKNVQAQRASKMA 121
           QV VG+++SG I  + V + D+V  GQ +A ID     + ++ +EAA+   QA  A   A
Sbjct: 78  QVQVGSELSGLITKVLVDVNDRVTAGQSLALIDPSRLDDTIKQSEAAVAAAQATVAQNQA 137

Query: 122 ALHNNQLVYQRQQAIVARGVG---VRADLDSAQATLIATRADINALDAQIIQAQIAVNTA 178
            +   +    R Q +     G    + ++D+A+A L    A + A  AQ++  Q A+ + 
Sbjct: 138 TVIEARAQLNRFQEVSRLSGGRVPAKTEMDNARAALARAAATLRASQAQVVSQQAALRSN 197

Query: 179 QVNLGYTKITSPIDGTIVALPVEEGQTVNAVQSAPTIVKVAQ-LATMTVEAQISEADVVK 237
           Q       I SP++G ++A  VE GQTV A  + PT+  +A+ L+ M +E  I EADV +
Sbjct: 198 QTQRDKAIIRSPVNGVVLARQVEPGQTVAASFNTPTLFVIAEDLSAMELEVAIDEADVGQ 257

Query: 238 VKTGMPVYFTILGEPGKRYSTQLRAIEPAPDSINDETTSTSTSTSSSTSSSSTAIYYNGL 297
           VK G    FT+   PG+ +   +R +    D  ++ +  TSTS+S+S+++S+  + Y   
Sbjct: 258 VKDGQKANFTVDAFPGETFPAAIRRV----DVGSNLSAQTSTSSSTSSTTSAQVVSYGAT 313

Query: 298 FDVANPDGALRISMTAQVYIVLAKAENAVVIPATAL 333
             VAN +  LR  MTA   IV  +  N +++P  AL
Sbjct: 314 LSVANAEQKLRPGMTATAEIVTLQKNNVLLVPNAAL 349