Pairwise Alignments

Query, 257 a.a., helix-turn-helix transcriptional regulator from Serratia liquefaciens MT49

Subject, 247 a.a., Transcriptional Regulator, AraC family (NCBI) from Rhodospirillum rubrum S1H

 Score =  149 bits (377), Expect = 4e-41
 Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 2/243 (0%)

Query: 16  RPVQFRCEEFNARTEFQPHRHSWGQLMWVKAGVMVLRIGGQRFLAPPEFVLWAPAEIEHS 75
           R V+ R  E+   T   PH H W QL++   GV ++      ++ PP+  +W PA I H 
Sbjct: 5   RSVRARTSEWPTGTVIVPHSHPWCQLVYAIGGVTIVETPEGSWVVPPDRAVWVPAGITHC 64

Query: 76  CYNQRLAQCRMVDIALPLC--AGLPEEPCLVSVTPIFRAIAEDFYARKQYIPQSKQDLRL 133
               R  Q R V + +     AGLP+   +V+V+P+ R +  +F  R     +   D RL
Sbjct: 65  VRAARGGQNRSVYVTIEAAQAAGLPKGCKVVAVSPLTRELILEFGRRPDDYDEDGADGRL 124

Query: 134 CRALIDQLHVSPVQQTYLPTSEDKFLAPVLEALEHCPSDNTSLAIWATRVYTTERTLSRR 193
            R L+DQ+   P Q  +LP   D     V  ALE  P+D   L  WA     + RTL+R 
Sbjct: 125 VRVLLDQIAALPAQPLHLPWPRDPRALAVARALEADPADGRPLEEWAREAGASARTLART 184

Query: 194 CQQDLGMSFSEWRQRLRFLHAVSLLEQGKTVQEVALEVGYSSASAFIVMFQQIAGTTPER 253
            + D G++F +WR RLR L A+  L  G+ V  VA ++GY   SAFI MF+++ GTTP  
Sbjct: 185 FRADCGLTFGQWRLRLRLLGALERLAAGEAVTAVAFDMGYDQPSAFIAMFRRLLGTTPGA 244

Query: 254 FRR 256
           + R
Sbjct: 245 YFR 247